Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_O12
         (865 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)               310   7e-85
SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)         242   2e-64
SB_23052| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.8  
SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)                      28   8.5  
SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_11160| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
          Length = 338

 Score =  310 bits (762), Expect = 7e-85
 Identities = 150/253 (59%), Positives = 180/253 (71%), Gaps = 1/253 (0%)
 Frame = +2

Query: 50  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 229
           F+ P HGS+GF P+KR +RHRGKVK+FPKDD + P HLTAFIG+KAGMTH++RE ++PGS
Sbjct: 5   FEAPRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHILREVEKPGS 64

Query: 230 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 409
           K+NKKE VEAVTIIETPPM+ VGVVGYIETP G+R L T+WAEH+SE+C+RRFYKNW   
Sbjct: 65  KLNKKEKVEAVTIIETPPMMVVGVVGYIETPRGMRVLKTIWAEHLSEECKRRFYKNWCNS 124

Query: 410 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 589
                      W D+ G+KSIE+DF  M +YC V+RVI HTQ KLLK RQKKAHIMEIQ+
Sbjct: 125 KKKAFTKASKRWADDDGKKSIEEDFNTMKKYCKVIRVICHTQQKLLKMRQKKAHIMEIQV 184

Query: 590 NGG-TIEDKVKWAREHLEKPIPGRFCVXPR*ND*LHWCHQGPRIQRCHFSXGTPKXLPRK 766
           NGG  + +KV W RE LE P P R    P     +    +G   +   +  GT K LPRK
Sbjct: 185 NGGKDVAEKVDWCRERLENPAPVRKVFSPDEMIDVIGVTKGHGFKGVTYRWGT-KKLPRK 243

Query: 767 XHXGSLGKFACIG 805
            H G L K ACIG
Sbjct: 244 THKG-LRKVACIG 255



 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 35/74 (47%), Positives = 44/74 (59%)
 Frame = +3

Query: 642 NLSLVDSVFXQDEMIDCIGVTKGQGYKGVTSRLAHQRXYPVRXTXGL*ESLPALGTWHPS 821
           N + V  VF  DEMID IGVTKG G+KGVT R   ++  P +   GL   +  +G WHP+
Sbjct: 203 NPAPVRKVFSPDEMIDVIGVTKGHGFKGVTYRWGTKKL-PRKTHKGL-RKVACIGAWHPA 260

Query: 822 XGVVPVARAGQKGF 863
                VARAGQ G+
Sbjct: 261 RVSFSVARAGQAGY 274


>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
          Length = 347

 Score =  242 bits (593), Expect = 2e-64
 Identities = 106/169 (62%), Positives = 129/169 (76%)
 Frame = +2

Query: 29  PACRTENFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVR 208
           P      F+ P HGS+GF P+KR +RHRGKVK+FPKDD + P HLTAFIG+KAGMTH++R
Sbjct: 46  PKMSHRKFEAPRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHILR 105

Query: 209 EPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRF 388
           E ++PGSK+NKKE VEAVTIIETPPM+ VGVVGYIETP G+R L T+WAEH+SE+C+RRF
Sbjct: 106 EVEKPGSKLNKKEKVEAVTIIETPPMMVVGVVGYIETPRGMRVLKTIWAEHLSEECKRRF 165

Query: 389 YKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQ 535
           YKNW              W D+ G+KSIE+DF  M +YC V+RVI HTQ
Sbjct: 166 YKNWCNSKKKAFTKASKRWADDDGKKSIEEDFNTMKKYCKVIRVICHTQ 214



 Score = 28.7 bits (61), Expect = 6.5
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +1

Query: 22  LSSSMSHRKFSAPRSWVYGILSQK 93
           L   MSHRKF APR    G L +K
Sbjct: 44  LEPKMSHRKFEAPRHGSLGFLPRK 67


>SB_23052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 479

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +2

Query: 29  PACRTENFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPV 157
           P C T+  QHP   S+ F  KK +  ++G  K++ K  P+KPV
Sbjct: 191 PVCDTDGQQHPNLCSLHFQGKKLA--YKGFCKSYCK-SPTKPV 230


>SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 1918

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +1

Query: 526 PHSNEAVKTATKEGSHYGNPT*RWYHRGQSEMGQ-RTSGETYP 651
           PH N +  T    G H  NPT    HR  S  GQ R +G   P
Sbjct: 282 PHQNGSNVTNIPVGGHPSNPTPAAIHRSMSVGGQPRVNGPGNP 324


>SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1778

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -3

Query: 851  TSTSYRDNTXRRMPSSQCRQTFL 783
            TS  Y DN  R + SSQCR  FL
Sbjct: 1541 TSGCYTDNAARCVVSSQCRPVFL 1563


>SB_11160| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -3

Query: 767 SYGVXSLVCQXRSDTFVSLALGDTNAVNHFILXKHRIDQG*VSPDVLWP 621
           S+ + S++ + R +   SL+      +  F L  HR D   +SP V WP
Sbjct: 61  SHSIESILSKDREEKVASLSPPPAMRIRPFYLPPHRYDYQRLSP-VYWP 108


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,962,026
Number of Sequences: 59808
Number of extensions: 611250
Number of successful extensions: 1279
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1277
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2467263854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)