Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_O10
(847 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g17590.1 68415.m02035 DC1 domain-containing protein contains ... 31 1.3
At3g11385.1 68416.m01386 DC1 domain-containing protein contains ... 29 2.9
At5g42840.1 68418.m05221 DC1 domain-containing protein contains ... 28 6.8
At3g55220.1 68416.m06133 splicing factor, putative contains CPSF... 28 6.8
At3g55200.1 68416.m06131 splicing factor, putative contains CPSF... 28 6.8
At3g27510.1 68416.m03439 DC1 domain-containing protein contains ... 28 6.8
At3g27490.1 68416.m03437 DC1 domain-containing protein contains ... 28 6.8
At3g45530.1 68416.m04917 DC1 domain-containing protein contains ... 28 9.0
At3g27473.1 68416.m03434 DC1 domain-containing protein contains ... 28 9.0
>At2g17590.1 68415.m02035 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 632
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = -3
Query: 692 VCRGRVSGKTFWNXATRXSTSPRSWLCTAXDRSVTSH 582
+C G VS +T+W PR W T +T H
Sbjct: 503 LCYGEVSDQTYWCEVCEGILDPREWFYTCSKPYITIH 539
>At3g11385.1 68416.m01386 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 766
Score = 29.5 bits (63), Expect = 2.9
Identities = 10/37 (27%), Positives = 17/37 (45%)
Frame = -3
Query: 692 VCRGRVSGKTFWNXATRXSTSPRSWLCTAXDRSVTSH 582
+C G + +T+W +PR W T + +T H
Sbjct: 656 LCYGEKADETYWCELCEKKVNPRDWFYTCNECCITIH 692
>At5g42840.1 68418.m05221 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 671
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = -3
Query: 692 VCRG--RVSGKTFWNXATRXSTSPRSWLCTAXDRSVTSH 582
+C G + SGK W T+P+SW T D VT H
Sbjct: 549 LCYGDEKASGKC-WCDICERETNPKSWFYTCKDCGVTFH 586
>At3g55220.1 68416.m06133 splicing factor, putative contains CPSF A
subunit region (PF03178); contains weak WD-40 repeat
(PF00400); similar to Splicing factor 3B subunit 3
(SF3b130)/spliceosomal protein/Splicing factor 3B
subunit 3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
EMBL:HSAJ1443_1
Length = 1214
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 391 GRGERSPRRWLQPRLAVPRQASTSVPRTPA 302
GRG RS R L+P LA+ A + +P P+
Sbjct: 426 GRGPRSSLRILRPGLAITEMAVSQLPGQPS 455
>At3g55200.1 68416.m06131 splicing factor, putative contains CPSF A
subunit region (PF03178); contains weak WD-40 repeat
(PF00400); similar to Splicing factor 3B subunit 3
(SF3b130)/spliceosomal protein/Splicing factor 3B
subunit 3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
EMBL:HSAJ1443_1
Length = 1214
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 391 GRGERSPRRWLQPRLAVPRQASTSVPRTPA 302
GRG RS R L+P LA+ A + +P P+
Sbjct: 426 GRGPRSSLRILRPGLAITEMAVSQLPGQPS 455
>At3g27510.1 68416.m03439 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 566
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -3
Query: 692 VCRG--RVSGKTFWNXATRXSTSPRSWLCTAXDRSVTSH 582
+C G + SGK +W T+P++W T D +T H
Sbjct: 455 LCYGEEKASGK-YWCDICERETNPKTWFYTCKDCGITLH 492
>At3g27490.1 68416.m03437 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 682
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/37 (27%), Positives = 16/37 (43%)
Frame = -3
Query: 692 VCRGRVSGKTFWNXATRXSTSPRSWLCTAXDRSVTSH 582
+C G + +W T+P +W T + VT H
Sbjct: 551 LCYGEKASGKYWCDICERETNPETWFYTGLESGVTLH 587
>At3g45530.1 68416.m04917 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 692
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = -3
Query: 692 VCRG--RVSGKTFWNXATRXSTSPRSWLCTAXDRSVTSH 582
+C G + SGK +W T+P +W T D VT H
Sbjct: 546 LCYGEEKASGK-YWCDICERETNPETWFYTCNDCGVTLH 583
>At3g27473.1 68416.m03434 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 662
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = -3
Query: 692 VCRG--RVSGKTFWNXATRXSTSPRSWLCTAXDRSVTSH 582
+C G SGK +W T+P++W T D VT H
Sbjct: 544 LCYGDENASGK-YWCDICERETNPKTWFYTCKDCGVTFH 581
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,212,238
Number of Sequences: 28952
Number of extensions: 336963
Number of successful extensions: 969
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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