Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_O09
         (716 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    23   2.5  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   2.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.7  

>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 266 TSPFGTPXXNPFYSNXXPXFFEP 198
           TSP  TP  NP YS   P + +P
Sbjct: 15  TSPLLTPPHNPAYS-PPPSYCDP 36


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 1   YWTASASVANSLMYYKYGAYNPYYLXTSSLDPXQNSC 111
           +W+ +A+ A +   YKY A  P        DP  +SC
Sbjct: 107 FWSPAATAAATATEYKYSAAAP-----GPSDPSVSSC 138


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/15 (46%), Positives = 7/15 (46%)
 Frame = -1

Query: 176  PLEWFPPFTPNKMVP 132
            P EW PP  P    P
Sbjct: 1371 PTEWHPPIPPTSEKP 1385


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,972
Number of Sequences: 336
Number of extensions: 1733
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19051215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)