Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_O09
         (716 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_812| Best HMM Match : FH2 (HMM E-Value=0)                           29   3.8  
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)                 28   8.7  

>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1430

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -2

Query: 631 GGXXPPPXGGXXFXXGXPPP 572
           GG  PPP GG  F    PPP
Sbjct: 650 GGIPPPPPGGGMFPPPPPPP 669


>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +3

Query: 543  PPPXXXGXXXGGGXPXKXXXPPXGGGXXPP 632
            PPP       GGG P     PP GG   PP
Sbjct: 957  PPPGGSAPPPGGGAPP--LPPPPGGSAPPP 984


>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
          Length = 768

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/37 (37%), Positives = 14/37 (37%)
 Frame = +3

Query: 522 PXXXXXXPPPXXXGXXXGGGXPXKXXXPPXGGGXXPP 632
           P      PPP   G   GG  P     PP  GG  PP
Sbjct: 656 PEAGPPPPPPPPPGGQAGGAPP--PPPPPLPGGAAPP 690


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,481,417
Number of Sequences: 59808
Number of extensions: 241219
Number of successful extensions: 443
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)