Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_O09
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    28   5.8  
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    28   7.7  

>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -2

Query: 649 FXXXXXGGXXPPPXGGXXFXXGXPPP 572
           F     GG  PPP  G  +  G PPP
Sbjct: 325 FGPPGMGGMPPPPPPGMRYPGGMPPP 350


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -2

Query: 649 FXXXXXGGXXPPPXGGXXFXXGXPPP 572
           F     GG  PPP  G  +  G PPP
Sbjct: 335 FGPPGMGGMPPPPPPGMRYPGGMPPP 360


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +3

Query: 543 PPPXXXGXXXGGGXPXKXXXPPXGGGXXP 629
           PPP   G   G G P     PP GG   P
Sbjct: 392 PPPSAFGAPQGPGGPGGYGPPPPGGPGAP 420


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,755,110
Number of Sequences: 27780
Number of extensions: 214126
Number of successful extensions: 482
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)