Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_O09
         (716 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family...    28   5.4  
At5g43770.1 68418.m05353 proline-rich family protein contains pr...    28   7.1  

>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
           protein Common family members: At4g18570, At4g04980,
           At5g61090 [Arabidopsis thaliana];  identical to cDNA
           CHUP1 for actin binding protein GI:28071264
          Length = 1004

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = -2

Query: 631 GGXXPPPXGGXXFXXGXPPPXXXPXXXGGG 542
           GG  PPP GG     G PPP   P   G G
Sbjct: 687 GGGPPPPPGG-----GPPPPPPPPGALGRG 711


>At5g43770.1 68418.m05353 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 187

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 261 PLWDPPXKPVLFQPXAP 211
           P+W+PP  P +F P +P
Sbjct: 156 PIWEPPRPPDIFPPESP 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,332,344
Number of Sequences: 28952
Number of extensions: 223952
Number of successful extensions: 359
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)