Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_O08
(837 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5K671 Cluster: Reverse transcriptase; n=2; Bombyx mori... 442 e-123
UniRef50_O44320 Cluster: Reverse transcriptase; n=1; Hippodamia ... 159 8e-38
UniRef50_Q49P02 Cluster: Reverse transcriptase-like protein; n=1... 151 2e-35
UniRef50_Q03278 Cluster: Retrovirus-related Pol polyprotein from... 141 2e-32
UniRef50_Q49P04 Cluster: Reverse transcriptase-like protein; n=2... 140 5e-32
UniRef50_Q76IP1 Cluster: Reverse transcriptase; n=1; Ciona intes... 138 1e-31
UniRef50_Q3C2H3 Cluster: Reverse transcriptase; n=1; Eptatretus ... 138 2e-31
UniRef50_Q3C2G5 Cluster: Reverse transcriptase; n=1; Procambarus... 129 7e-29
UniRef50_Q3C2G7 Cluster: Reverse transcriptase; n=1; Metacrinus ... 126 9e-28
UniRef50_Q76IP0 Cluster: Reverse transcriptase; n=1; Ciona intes... 125 1e-27
UniRef50_P16423 Cluster: Retrovirus-related Pol polyprotein from... 123 6e-27
UniRef50_O44323 Cluster: Reverse transcriptase; n=1; Forficula a... 111 2e-23
UniRef50_O44319 Cluster: Reverse transcriptase; n=1; Anurida mar... 109 1e-22
UniRef50_Q76IN9 Cluster: Reverse transcriptase; n=1; Ciona intes... 102 1e-20
UniRef50_Q03279 Cluster: Retrovirus-related Pol polyprotein from... 100 9e-20
UniRef50_Q4QQD8 Cluster: Polyprotein; n=1; Schistosoma mansoni|R... 97 6e-19
UniRef50_UPI0000D57891 Cluster: PREDICTED: similar to Hypothetic... 87 7e-16
UniRef50_Q03274 Cluster: Retrovirus-related Pol polyprotein from... 86 9e-16
UniRef50_Q03275 Cluster: Retrovirus-related Pol polyprotein from... 78 3e-13
UniRef50_Q3C2G4 Cluster: Reverse transcriptase; n=1; Triops long... 74 4e-12
UniRef50_O44321 Cluster: Reverse transcriptase; n=1; Tenebrio mo... 74 5e-12
UniRef50_Q05118 Cluster: Retrovirus-related Pol polyprotein from... 72 2e-11
UniRef50_O44318 Cluster: Reverse transcriptase; n=1; Limulus pol... 69 1e-10
UniRef50_Q3C2H0 Cluster: Reverse transcriptase; n=3; Mauremys re... 69 2e-10
UniRef50_Q3C2H1 Cluster: Reverse transcriptase; n=1; Oryzias lat... 67 6e-10
UniRef50_Q76IN6 Cluster: Reverse transcriptase; n=5; Rasborinae|... 65 2e-09
UniRef50_O44324 Cluster: Reverse transcriptase; n=1; Tenebrio mo... 64 3e-09
UniRef50_Q76IN7 Cluster: Reverse transcriptase; n=1; Ciona savig... 58 2e-07
UniRef50_Q9U8F6 Cluster: Reverse transcriptase; n=1; Nasonia vit... 56 1e-06
UniRef50_Q76IN8 Cluster: Reverse transcriptase; n=1; Ciona intes... 52 1e-05
UniRef50_Q3C2G6 Cluster: Reverse transcriptase; n=1; Hasarius ad... 50 7e-05
UniRef50_Q76IM9 Cluster: Reverse transcriptase; n=1; Ciona intes... 39 0.14
UniRef50_A2QKI9 Cluster: Putative uncharacterized protein precur... 39 0.18
UniRef50_UPI00004991CA Cluster: hypothetical protein 202.t00004;... 38 0.41
UniRef50_Q49P01 Cluster: Reverse transcriptase-like protein; n=1... 37 0.55
UniRef50_Q4DIA4 Cluster: FG-GAP repeat protein, putative; n=2; T... 36 1.7
UniRef50_Q4SCG6 Cluster: Chromosome undetermined SCAF14653, whol... 35 2.2
UniRef50_Q76IN3 Cluster: Reverse transcriptase; n=142; Entamoeba... 35 2.2
UniRef50_A7IJE3 Cluster: Flavoprotein involved in K+ transport-l... 35 2.9
UniRef50_Q31EX1 Cluster: 2-oxoacid:acceptor oxidoreductase, beta... 34 3.8
UniRef50_Q7NJU1 Cluster: Carboxysome formation protein; n=20; Ba... 34 5.1
UniRef50_UPI0000D9EC0F Cluster: PREDICTED: hypothetical protein;... 33 6.7
UniRef50_Q6A960 Cluster: Phosphoribosyltransferase; n=2; Actinom... 33 6.7
UniRef50_Q7R1V1 Cluster: GLP_190_9582_12026; n=1; Giardia lambli... 33 6.7
>UniRef50_Q5K671 Cluster: Reverse transcriptase; n=2; Bombyx mori|Rep:
Reverse transcriptase - Bombyx mori (Silk moth)
Length = 1114
Score = 442 bits (1088), Expect = e-123
Identities = 209/209 (100%), Positives = 209/209 (100%)
Frame = +1
Query: 16 FEASGCVTLEHSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLD 195
FEASGCVTLEHSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLD
Sbjct: 708 FEASGCVTLEHSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLD 767
Query: 196 VQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWSVAR 375
VQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWSVAR
Sbjct: 768 VQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWSVAR 827
Query: 376 AAAKSDKIRKKLRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTS 555
AAAKSDKIRKKLRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTS
Sbjct: 828 AAAKSDKIRKKLRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTS 887
Query: 556 TKWIRERCAQITGRDFVQFVHTHINALPS 642
TKWIRERCAQITGRDFVQFVHTHINALPS
Sbjct: 888 TKWIRERCAQITGRDFVQFVHTHINALPS 916
Score = 112 bits (269), Expect = 1e-23
Identities = 50/53 (94%), Positives = 51/53 (96%)
Frame = +2
Query: 674 GGESSLTCRAGCKVRETTAHILQQCHRTHGGRILRHNKIVFFVAKAMEKNKWT 832
GGESSLTCRAGCKVRETTAHILQQCHRT GGRILRHNKIV FVAKAME+NKWT
Sbjct: 927 GGESSLTCRAGCKVRETTAHILQQCHRTRGGRILRHNKIVSFVAKAMEENKWT 979
>UniRef50_O44320 Cluster: Reverse transcriptase; n=1; Hippodamia
convergens|Rep: Reverse transcriptase - Hippodamia
convergens (Convergent lady beetle)
Length = 493
Score = 159 bits (386), Expect = 8e-38
Identities = 83/198 (41%), Positives = 117/198 (59%), Gaps = 1/198 (0%)
Frame = +1
Query: 52 ISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLDVQIRKAVGQWLR 231
++ L ++RAPLKPQQR+ +LR L+PRF H + G ++ LR LD+++R A+ +R
Sbjct: 97 VAECLERLTRAPLKPQQRMHLLRVFLLPRFYHVWTFGRLNAGILRRLDIRVRNAIRTSVR 156
Query: 232 LPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWSVARAAAKSDKIRKKL 411
LP DVP Y+HA GGL IP + IP L ++RF L S R A+++ K+
Sbjct: 157 LPHDVPVGYFHAPTNAGGLGIPQLSRFIPLLRLKRFERLAHSSVESVRECARTEPAVAKV 216
Query: 412 RWAWKQLRR-FSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWIRERCAQI 588
RW ++L RV TQ S+R FW L+ S+DGR LRES R ST+W+R I
Sbjct: 217 RWCRERLADVVDRVADGTQ--SLREFWTRELYRSMDGRALRESVRETPSTQWLRCCTRVI 274
Query: 589 TGRDFVQFVHTHINALPS 642
RD++ ++ HINALPS
Sbjct: 275 PARDWLNYISVHINALPS 292
Score = 59.7 bits (138), Expect = 9e-08
Identities = 23/48 (47%), Positives = 32/48 (66%)
Frame = +2
Query: 689 LTCRAGCKVRETTAHILQQCHRTHGGRILRHNKIVFFVAKAMEKNKWT 832
+TCR GC ET AH +Q CHRTHGGR+LRH+ I ++ + + W+
Sbjct: 306 VTCRGGCLTAETPAHCIQVCHRTHGGRVLRHDAIAKALSVHLTQRGWS 353
>UniRef50_Q49P02 Cluster: Reverse transcriptase-like protein; n=1;
Ixodes scapularis|Rep: Reverse transcriptase-like
protein - Ixodes scapularis (Black-legged tick) (Deer
tick)
Length = 513
Score = 151 bits (367), Expect = 2e-35
Identities = 84/202 (41%), Positives = 114/202 (56%)
Frame = +1
Query: 34 VTLEHSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLDVQIRKA 213
V L ++S L +++APLKPQQRL ILR +LIPR H VLG + L+ LDVQIR A
Sbjct: 122 VPLTKDVASMLERVAKAPLKPQQRLVILRFYLIPRLYHRLVLGRWNRKLLKRLDVQIRDA 181
Query: 214 VGQWLRLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWSVARAAAKSD 393
V +W+ LP D P YYHA V +GGL + S IP + V+R + +S + R AA +
Sbjct: 182 VRKWMALPHDTPLGYYHAPVAEGGLGVGSFSTAIPWMQVQRLPRMATSSSPICRQAADTY 241
Query: 394 KIRKKLRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWIRE 573
++ L A K R + + + SV W LHAS DG LRE R+P + +W++E
Sbjct: 242 MVKTALDRAKKAC--VVRGNILSDKQSVGKHWSALLHASNDGHALREVGRSPAAQRWVQE 299
Query: 574 RCAQITGRDFVQFVHTHINALP 639
+TGR F+ INALP
Sbjct: 300 GTGLLTGRAFIDVNKLRINALP 321
Score = 61.3 bits (142), Expect = 3e-08
Identities = 24/53 (45%), Positives = 32/53 (60%)
Frame = +2
Query: 674 GGESSLTCRAGCKVRETTAHILQQCHRTHGGRILRHNKIVFFVAKAMEKNKWT 832
G ++ CR GC+ ET H+LQ+CHRTH RI RH+ +V V + K WT
Sbjct: 329 GRDTDKNCRGGCRAPETLDHVLQKCHRTHAARIKRHDGLVQIVVDRLRKKGWT 381
>UniRef50_Q03278 Cluster: Retrovirus-related Pol polyprotein from
type-1 retrotransposable element R2 (Retrovirus-related
Pol polyprotein from type I retrotransposable element R2)
[Includes: Reverse transcriptase (EC 2.7.7.49);
Endonuclease]; n=1; Nasonia vitripennis|Rep:
Retrovirus-related Pol polyprotein from type-1
retrotransposable element R2 (Retrovirus-related Pol
polyprotein from type I retrotransposable element R2)
[Includes: Reverse transcriptase (EC 2.7.7.49);
Endonuclease] - Nasonia vitripennis (Parasitic wasp)
Length = 1025
Score = 141 bits (341), Expect = 2e-32
Identities = 75/210 (35%), Positives = 116/210 (55%)
Frame = +1
Query: 13 IFEASGCVTLEHSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRML 192
++ + G + ++ +I+ L ++ APLKPQQR+ IL LIPRF H VLG S+ +R
Sbjct: 634 VYNSYGPIQVKINIAGDLQRVTAAPLKPQQRMAILGMFLIPRFIHKLVLGRTSNADVRKG 693
Query: 193 DVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWSVA 372
D IRK V WLRLP D P Y+HA +++GGL IP+ + IP+L+ R L +S A
Sbjct: 694 DKIIRKTVRGWLRLPHDTPIGYFHAPIKEGGLGIPAFESRIPELLKSRIEALGASNMQTA 753
Query: 373 RAAAKSDKIRKKLRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPT 552
R+ D + ++ +W Q + S W + LH + DG++LR++ +
Sbjct: 754 RSLLGGDWVAERKKWINTQKIKNSE-------------WAQKLHLTTDGKDLRDTRKAEA 800
Query: 553 STKWIRERCAQITGRDFVQFVHTHINALPS 642
S WIR+ I ++++ HT INALP+
Sbjct: 801 SYSWIRDIHVAIPASVWIKYHHTRINALPT 830
Score = 62.5 bits (145), Expect = 1e-08
Identities = 26/45 (57%), Positives = 33/45 (73%)
Frame = +2
Query: 695 CRAGCKVRETTAHILQQCHRTHGGRILRHNKIVFFVAKAMEKNKW 829
CRAGC + ET H++QQC RTHGGR+LRH+KI VA M++ W
Sbjct: 846 CRAGCGLPETLYHVVQQCPRTHGGRVLRHDKIAEQVAIFMQEKGW 890
>UniRef50_Q49P04 Cluster: Reverse transcriptase-like protein; n=2;
Ixodidae|Rep: Reverse transcriptase-like protein -
Amblyomma americanum (lone star tick)
Length = 510
Score = 140 bits (338), Expect = 5e-32
Identities = 78/211 (36%), Positives = 112/211 (53%), Gaps = 2/211 (0%)
Frame = +1
Query: 16 FEASGCVT--LEHSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRM 189
F A+G + + +++ L +S APLKPQQRL +LR +L+PR H LG IS L
Sbjct: 115 FSATGRIQGPIRFELAALLQRVSSAPLKPQQRLVVLRYYLMPRLTHRLTLGPISAKTLTA 174
Query: 190 LDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWSV 369
+D IR + +WL LP DVP +++A ++ GGL I +R TIP L +RRF + S S
Sbjct: 175 IDRTIRSNIRRWLALPLDVPMGFFYAQIEQGGLGINCLRTTIPSLRLRRFAKMTHSSNSA 234
Query: 370 ARAAAKSDKIRKKLRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTP 549
AA + + A ++L F + S R FW LHAS DGR L+
Sbjct: 235 CTFAATRRTVTDSIHQA-ERLCVFKGQTLRNPKESGR-FWSSQLHASSDGRSLQGCKNAK 292
Query: 550 TSTKWIRERCAQITGRDFVQFVHTHINALPS 642
ST W+RE + + GR+F+ H A+P+
Sbjct: 293 GSTYWLREGTSFLKGREFIDLTKFHTGAMPN 323
Score = 52.4 bits (120), Expect = 1e-05
Identities = 21/45 (46%), Positives = 29/45 (64%)
Frame = +2
Query: 695 CRAGCKVRETTAHILQQCHRTHGGRILRHNKIVFFVAKAMEKNKW 829
CRAGC+ E+ HI Q+CHRTH RI R N +V +++K + W
Sbjct: 337 CRAGCESEESMGHIQQRCHRTHHTRIERRNNLVKYLSKRLHDLGW 381
>UniRef50_Q76IP1 Cluster: Reverse transcriptase; n=1; Ciona
intestinalis|Rep: Reverse transcriptase - Ciona
intestinalis (Transparent sea squirt)
Length = 998
Score = 138 bits (335), Expect = 1e-31
Identities = 82/211 (38%), Positives = 117/211 (55%), Gaps = 1/211 (0%)
Frame = +1
Query: 7 VSIFEASGCVTLEHSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLR 186
V+I A V S++S L N+SRAPLKPQQRL IL HL+P H VL + S L+
Sbjct: 599 VNISAAGMRVDAADSLASKLANLSRAPLKPQQRLYILCTHLLPSIYHQLVLSSTSKKFLK 658
Query: 187 MLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWS 366
LD +R AV +WLRLP D PKAY+HA DGGL +P ++ IP R+ + S
Sbjct: 659 YLDRCVRVAVRRWLRLPKDTPKAYFHAKCNDGGLGVPELQRVIPLQKAGRWLKMTRSQDP 718
Query: 367 VARAAAKSDKIRKKL-RWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTR 543
V +AA + +K L RW+ +L ++ TT + + L++SV+GR LR+S
Sbjct: 719 VVQAAVGLEYFQKLLERWSTPELYQWGGGGITTS-GHLAVAQARSLYSSVNGRGLRQSGL 777
Query: 544 TPTSTKWIRERCAQITGRDFVQFVHTHINAL 636
T W+R C+ ++GR+F+ + N L
Sbjct: 778 VSTQFDWVRSGCSLLSGRNFIGAMQLRGNLL 808
Score = 39.1 bits (87), Expect = 0.14
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 707 CKVRETTAHILQQCHRTH-GGRILRHNKIVFFVAKAMEKNKW 829
C+ E++ HILQ C RT G RI RH+ + VA+ K W
Sbjct: 828 CRTPESSGHILQVCPRTSWGARIGRHDNVAKLVARESAKRHW 869
>UniRef50_Q3C2H3 Cluster: Reverse transcriptase; n=1; Eptatretus
burgeri|Rep: Reverse transcriptase - Eptatretus burgeri
(Inshore hagfish)
Length = 486
Score = 138 bits (333), Expect = 2e-31
Identities = 81/205 (39%), Positives = 108/205 (52%), Gaps = 7/205 (3%)
Frame = +1
Query: 49 SISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLDVQIRKAVGQWL 228
++ L N+ RAP+KPQQR+ +LR HLIP+ QHG VLG LR LDVQ+R WL
Sbjct: 98 ALEKGLRNLRRAPIKPQQRMFMLRDHLIPQLQHGLVLGAARRGTLRKLDVQMRHHTRLWL 157
Query: 229 RLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWSVARAAAKS---DKI 399
RLP D P AY+HA DGGL +P TIP L RR GL+ S RA ++ D +
Sbjct: 158 RLPKDTPVAYFHARSADGGLGLPQFSVTIPILRERRMRGLEQSDSPYVRAVIRTKLGDVV 217
Query: 400 RKK----LRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWI 567
R + L + ++ R + D T + LH +VDGR L E++R P W+
Sbjct: 218 RSRNTYNLHYGGERPRSIKQADVITAK---------LLHQAVDGRGLLEASRVPEPNDWV 268
Query: 568 RERCAQITGRDFVQFVHTHINALPS 642
R +GR F+ V N LP+
Sbjct: 269 LGRSRLQSGRAFIDSVKVRGNLLPT 293
Score = 44.4 bits (100), Expect = 0.004
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +2
Query: 695 CRAGCKVRETTAHILQQCHRTHGGRILRHNKIVFF 799
C AGC+ +E+ HI Q C RTHGG + RH+ + F
Sbjct: 310 CDAGCRAKESLNHISQACIRTHGGTVQRHDAVSRF 344
>UniRef50_Q3C2G5 Cluster: Reverse transcriptase; n=1; Procambarus
clarkii|Rep: Reverse transcriptase - Procambarus clarkii
(Red swamp crayfish)
Length = 480
Score = 129 bits (312), Expect = 7e-29
Identities = 73/191 (38%), Positives = 99/191 (51%)
Frame = +1
Query: 64 LNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLDVQIRKAVGQWLRLPAD 243
L NI++APLKPQQRL +L+ HLIP+ H VLG+++ L LD ++R A WLRLP D
Sbjct: 103 LTNITKAPLKPQQRLYLLKHHLIPKMNHRLVLGHVAKTELARLDRRLRHATRGWLRLPHD 162
Query: 244 VPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWSVARAAAKSDKIRKKLRWAW 423
P A+ HA V+DGGL IP +I +R G L S V AAA + ++R W
Sbjct: 163 TPNAFIHADVKDGGLGIPDFATSIRLQKNKRLGALTGSADPVVVAAALLPAFQARMR-RW 221
Query: 424 KQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWIRERCAQITGRDF 603
+ S+ R WR L++ VDG L S P+ KW+ ++G DF
Sbjct: 222 VDPATAAGTPSSRTTECARR-WRAKLYSMVDGAGLASSCEVPSCHKWVASGTRLLSGGDF 280
Query: 604 VQFVHTHINAL 636
V NA+
Sbjct: 281 AHAVQIRANAV 291
Score = 42.7 bits (96), Expect = 0.011
Identities = 20/42 (47%), Positives = 25/42 (59%)
Frame = +2
Query: 680 ESSLTCRAGCKVRETTAHILQQCHRTHGGRILRHNKIVFFVA 805
E+S C A C+ T HI Q CH+THG R+ RH+ I F A
Sbjct: 303 EASGLCDA-CRKPGTLGHISQACHKTHGARVKRHDDITRFAA 343
>UniRef50_Q3C2G7 Cluster: Reverse transcriptase; n=1; Metacrinus
rotundus|Rep: Reverse transcriptase - Metacrinus
rotundus
Length = 492
Score = 126 bits (303), Expect = 9e-28
Identities = 71/200 (35%), Positives = 108/200 (54%), Gaps = 1/200 (0%)
Frame = +1
Query: 40 LEHSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLDVQIRKAVG 219
++ + + L N++RAPLKP QRL ILR L+P H VL ++ L+ LD +R A
Sbjct: 97 VKEKLVAGLANLTRAPLKPFQRLHILRVQLMPSLTHQLVLAGVTKGYLKDLDRLVRAASR 156
Query: 220 QWLRLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWSVARAAAKSDKI 399
WL+LP D P A+ HA +DGGL+I S+ TIP L +RFG L S AA +++
Sbjct: 157 SWLKLPHDTPNAFLHANYKDGGLSIDSLSLTIPFLKGKRFGKLTVSSDDTVLAATETNSF 216
Query: 400 -RKKLRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWIRER 576
R +W Q++ + ++S + ++R + LH ++DG LR ++ +WI +
Sbjct: 217 KRMHKKWREAQVKEGALMNS---KAAIRRGFAAQLHGTLDGAGLRSMPQSGHIQRWITDP 273
Query: 577 CAQITGRDFVQFVHTHINAL 636
C GR+F V NAL
Sbjct: 274 CPPCNGRNFTGRVKVRANAL 293
Score = 39.5 bits (88), Expect = 0.10
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 677 GESSLTCRAGCKVR-ETTAHILQQCHRTHGGRILRHNKIV 793
G + + R C R E+ HILQ C R HG R+ RH+KIV
Sbjct: 302 GRNGVDVRCDCCGRPESLGHILQVCARCHGKRVARHDKIV 341
>UniRef50_Q76IP0 Cluster: Reverse transcriptase; n=1; Ciona
intestinalis|Rep: Reverse transcriptase - Ciona
intestinalis (Transparent sea squirt)
Length = 1104
Score = 125 bits (302), Expect = 1e-27
Identities = 71/197 (36%), Positives = 99/197 (50%)
Frame = +1
Query: 52 ISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLDVQIRKAVGQWLR 231
++ L +SRAPLKPQQRL +LR HL+P+ QHG VL + + L LD +R A+ +WL
Sbjct: 718 LTEGLAELSRAPLKPQQRLYLLRVHLLPKLQHGLVLSSCAKRALTYLDKSVRSAIRRWLT 777
Query: 232 LPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWSVARAAAKSDKIRKKL 411
LP D P A+YHA DGGL I + TIP L R L S V K L
Sbjct: 778 LPKDTPTAFYHAKACDGGLGITRLEHTIPILKRNRMMKLTLSEDPVIMELVKLTYFTNLL 837
Query: 412 RWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWIRERCAQIT 591
+ ++ + T + S+ LH SVDGR L + P + W+ + ++
Sbjct: 838 H-KYSNVKLLNSW-PVTDKDSLARAEASMLHTSVDGRGLSNCSDVPRQSDWVTNGASLLS 895
Query: 592 GRDFVQFVHTHINALPS 642
GRDF+ + N LP+
Sbjct: 896 GRDFIGAIKVRGNLLPT 912
Score = 39.1 bits (87), Expect = 0.14
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +2
Query: 674 GGESSLTCRAGCKVRETTAHILQQCHRTHGGRILRHNKIVFFVAKAMEKNKWT 832
G + +TC C+ E+ HILQ C RT G RI RH+ ++ V WT
Sbjct: 919 GRQREITCDC-CRRPESLGHILQTCPRTWGPRISRHDSLLKRVRNQACLKNWT 970
>UniRef50_P16423 Cluster: Retrovirus-related Pol polyprotein from
type-2 retrotransposable element R2DM (Retrovirus-related
Pol polyprotein from type II retrotransposable element
R2DM) [Includes: Protease (EC 3.4.23.-); Reverse
transcriptase (EC 2.7.7.49); Endonuclease]; n=26;
Drosophila|Rep: Retrovirus-related Pol polyprotein from
type-2 retrotransposable element R2DM (Retrovirus-related
Pol polyprotein from type II retrotransposable element
R2DM) [Includes: Protease (EC 3.4.23.-); Reverse
transcriptase (EC 2.7.7.49); Endonuclease] - Drosophila
melanogaster (Fruit fly)
Length = 1057
Score = 123 bits (296), Expect = 6e-27
Identities = 75/211 (35%), Positives = 106/211 (50%), Gaps = 2/211 (0%)
Frame = +1
Query: 16 FEASGCVTLE--HSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRM 189
F A+G V I L +++APLKPQQRL LR LIP+ H LG+++ LR
Sbjct: 660 FTATGRVRCNPAEDIGPKLQRLTKAPLKPQQRLFALRTVLIPQLYHKLALGSVAIGVLRK 719
Query: 190 LDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWSV 369
D IR V +WL LP DVP A+ HA + GGL IPS+R P L +RR + P
Sbjct: 720 TDKLIRYYVRRWLNLPLDVPIAFVHAPPKSGGLGIPSLRWVAPMLRLRRLSNI-KWPHLT 778
Query: 370 ARAAAKSDKIRKKLRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTP 549
A S +K R + R + + RP++ +W L+ SVDG LRE
Sbjct: 779 QNEVASSFLEAEKQR---ARDRLLAEQNELLSRPAIEKYWANKLYLSVDGSGLREGGHYG 835
Query: 550 TSTKWIRERCAQITGRDFVQFVHTHINALPS 642
W+ + +TG++++ + INALP+
Sbjct: 836 PQHGWVSQPTRLLTGKEYMDGIRLRINALPT 866
Score = 55.6 bits (128), Expect = 1e-06
Identities = 21/42 (50%), Positives = 31/42 (73%)
Frame = +2
Query: 695 CRAGCKVRETTAHILQQCHRTHGGRILRHNKIVFFVAKAMEK 820
CRAGC ETT HI+Q+C+R+HG R+ RHN +V + + +E+
Sbjct: 881 CRAGCDAPETTNHIMQKCYRSHGRRVARHNCVVNRIKRGLEE 922
>UniRef50_O44323 Cluster: Reverse transcriptase; n=1; Forficula
auricularia|Rep: Reverse transcriptase - Forficula
auricularia (European earwig)
Length = 1033
Score = 111 bits (267), Expect = 2e-23
Identities = 69/205 (33%), Positives = 109/205 (53%), Gaps = 3/205 (1%)
Frame = +1
Query: 37 TLEHSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLDVQIRKAV 216
T+ H + ++ +++APLKPQQRL LR ++P H LG + L+ +D+ +R A
Sbjct: 645 TIAH-LKRKIDVLTKAPLKPQQRLFALRVVILPSCYHILTLGGSNLSLLKKIDLMVRAAG 703
Query: 217 GQWLRLPADVPKAYYHAAVQDGGLAIPSVRATIP---DLIVRRFGGLDSSPWSVARAAAK 387
+W LP D P AY+HA+ +DGGL +PS+R IP L + R+ G + +V
Sbjct: 704 RKWCCLPKDTPNAYFHASSRDGGLGLPSMRWLIPLHRYLRLLRYEGRNPEDTNV---YLT 760
Query: 388 SDKIRKKLRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWI 567
++ R K+R + S +D + + FW + L+ SVDG L ES++ P +W
Sbjct: 761 TEINRAKIRLS----DNGSNIDC---QAKLWQFWADRLYKSVDGSALIESSKVPQQHRWA 813
Query: 568 RERCAQITGRDFVQFVHTHINALPS 642
+TGRDF+ + IN LP+
Sbjct: 814 TGGSRFLTGRDFINSIKLRINTLPT 838
Score = 52.0 bits (119), Expect = 2e-05
Identities = 22/45 (48%), Positives = 29/45 (64%)
Frame = +2
Query: 674 GGESSLTCRAGCKVRETTAHILQQCHRTHGGRILRHNKIVFFVAK 808
G E + CR GC ET H+LQ CHRT+G R+ RHN I ++A+
Sbjct: 845 GREGNRMCRGGCYNVETLHHVLQVCHRTNGTRVKRHNAIRQYIAR 889
>UniRef50_O44319 Cluster: Reverse transcriptase; n=1; Anurida
maritima|Rep: Reverse transcriptase - Anurida maritima
Length = 1151
Score = 109 bits (261), Expect = 1e-22
Identities = 65/200 (32%), Positives = 106/200 (53%), Gaps = 3/200 (1%)
Frame = +1
Query: 49 SISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLDVQIRKAV-GQ- 222
S+ + L I+++PLKPQQ+L ++R HL+P+ + V+ I L LD +R A+ G+
Sbjct: 757 SLQTFLERIAKSPLKPQQKLYLIRVHLLPKLIYPLVMAPIRASMLNKLDRMVRVALTGKD 816
Query: 223 -WLRLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWSVARAAAKSDKI 399
L LP VP A+++A + +GGL + +R +IP ++ RF + +S RAAAK
Sbjct: 817 GILHLPQSVPSAFFYAPIGEGGLGLMELRTSIPAMVKARFERMMNSTCHHVRAAAKGAAN 876
Query: 400 RKKLRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWIRERC 579
++ A + LR+ + T V+ + LH S DG+ L E+ R W +
Sbjct: 877 SNRIALANRFLRKTADGIPVTSAKLVKEYQAAKLHGSFDGKPLSEAGRVKGIHSWTCDGR 936
Query: 580 AQITGRDFVQFVHTHINALP 639
+TG+ F + + INALP
Sbjct: 937 MVMTGQAFCEALKIRINALP 956
Score = 50.8 bits (116), Expect = 4e-05
Identities = 21/40 (52%), Positives = 26/40 (65%)
Frame = +2
Query: 674 GGESSLTCRAGCKVRETTAHILQQCHRTHGGRILRHNKIV 793
G E CRAGCK E+ H+LQ C RTH R+ RH+K+V
Sbjct: 964 GTEKPRECRAGCKTTESLNHVLQVCPRTHDMRVARHDKLV 1003
>UniRef50_Q76IN9 Cluster: Reverse transcriptase; n=1; Ciona
intestinalis|Rep: Reverse transcriptase - Ciona
intestinalis (Transparent sea squirt)
Length = 779
Score = 102 bits (244), Expect = 1e-20
Identities = 60/198 (30%), Positives = 98/198 (49%)
Frame = +1
Query: 43 EHSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLDVQIRKAVGQ 222
+ + S L + APLKPQQR+ ILR +++PR H N + L+ LD IR V +
Sbjct: 422 KEKLMSDLKETTEAPLKPQQRIFILRNYILPRSLHILTFTNTTARLLKQLDSAIRIHVRR 481
Query: 223 WLRLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWSVARAAAKSDKIR 402
WL+LP D P Y ++ +DGGL +P + + +P L +RR ++S A +S
Sbjct: 482 WLKLPKDTPLGYLYSDYKDGGLGVPRLLSRVPLLRIRRMAKYNTSE-DPTTVALRSCHTF 540
Query: 403 KKLRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWIRERCA 582
W + S V + +R R F R L S+DG L + TP + +W+
Sbjct: 541 TSAAVKWAMPPKISNVVISDKRKE-RDFHRSELATSIDGSGLSCANTTPRAHQWVVNGTG 599
Query: 583 QITGRDFVQFVHTHINAL 636
++G++++ ++ N L
Sbjct: 600 LLSGKNYIGAINARGNLL 617
Score = 48.4 bits (110), Expect = 2e-04
Identities = 21/41 (51%), Positives = 26/41 (63%)
Frame = +2
Query: 707 CKVRETTAHILQQCHRTHGGRILRHNKIVFFVAKAMEKNKW 829
C ET +HILQ C RTHG RI RH+K+ +A+A K W
Sbjct: 637 CHRVETLSHILQSCPRTHGPRIRRHDKVTKVIAEAAGKKGW 677
>UniRef50_Q03279 Cluster: Retrovirus-related Pol polyprotein from
type-1 retrotransposable element R2 (Retrovirus-related
Pol polyprotein from type I retrotransposable element R2)
[Includes: Reverse transcriptase (EC 2.7.7.49);
Endonuclease]; n=1; Bradysia coprophila|Rep:
Retrovirus-related Pol polyprotein from type-1
retrotransposable element R2 (Retrovirus-related Pol
polyprotein from type I retrotransposable element R2)
[Includes: Reverse transcriptase (EC 2.7.7.49);
Endonuclease] - Sciara coprophila (Fungus gnat)
Length = 869
Score = 99.5 bits (237), Expect = 9e-20
Identities = 60/212 (28%), Positives = 110/212 (51%), Gaps = 2/212 (0%)
Frame = +1
Query: 13 IFEASGCVTLEHSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRML 192
++ SG + S+ L+ +++ PLKPQQR+ +L+ +IP+ + VL + L +
Sbjct: 474 VYTTSGPEVAKVSMDDDLSKLTKGPLKPQQRIHLLKTFVIPKHLNRLVLSRTTATGLCKM 533
Query: 193 DVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWSVA 372
D+ IRK V +WLRLP DVP A+ +A V+ GG IP ++ IP + RF L+ + +
Sbjct: 534 DLLIRKYVRRWLRLPGDVPVAFLYAPVKAGGKGIPCLKQWIP---LMRFLRLNKAKRTGG 590
Query: 373 R--AAAKSDKIRKKLRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRT 546
AA + ++ + + K + +T + +WR L VDG++L+ +
Sbjct: 591 DRIAAVLNCQLYASISHSCKTGPVSVGLWRSTNTGGLSAYWRRILIGMVDGKDLKSAQNH 650
Query: 547 PTSTKWIRERCAQITGRDFVQFVHTHINALPS 642
++T + R I+G D++ + N++P+
Sbjct: 651 SSATSFNSIRMNDISGEDYIHYNQLRTNSIPT 682
Score = 37.1 bits (82), Expect = 0.55
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 695 CRAGCKVRETTAHILQQCHRTHGGRILRHNKIV 793
CRAGC + H +Q C R+ GG + RH+++V
Sbjct: 697 CRAGCDKLKRLQHDIQGCIRSQGGLVQRHDRVV 729
>UniRef50_Q4QQD8 Cluster: Polyprotein; n=1; Schistosoma mansoni|Rep:
Polyprotein - Schistosoma mansoni (Blood fluke)
Length = 1144
Score = 96.7 bits (230), Expect = 6e-19
Identities = 58/173 (33%), Positives = 90/173 (52%)
Frame = +1
Query: 52 ISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLDVQIRKAVGQWLR 231
+++ L IS APLKPQQR++IL+ +L+PR + LG + L+ +D I A+ +WLR
Sbjct: 764 LNNYLTEISCAPLKPQQRMKILKDNLLPRLLYPLTLGIVHLKTLKSMDRNIHTAIRKWLR 823
Query: 232 LPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWSVARAAAKSDKIRKKL 411
LP+D P AY+H+ V GGL I + +++P +R L SSP + S +
Sbjct: 824 LPSDTPLAYFHSPVAAGGLGILHLSSSVPFHRRKRLETLLSSPNRLLHKLPTSPTLASYS 883
Query: 412 RWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWIR 570
+ QL ++ T R W LH+S DG+ L + + S W+R
Sbjct: 884 HLS--QLPVRIGHETVTSREEASNSWVRRLHSSCDGKGLLLAPLSTESHAWLR 934
Score = 49.2 bits (112), Expect = 1e-04
Identities = 22/48 (45%), Positives = 27/48 (56%)
Frame = +2
Query: 683 SSLTCRAGCKVRETTAHILQQCHRTHGGRILRHNKIVFFVAKAMEKNK 826
+ L CR GC ET HILQ C TH R RHN++ VAK + + K
Sbjct: 969 NGLNCRGGCAHHETIHHILQHCALTHDIRCKRHNELCNLVAKKLRRQK 1016
>UniRef50_UPI0000D57891 Cluster: PREDICTED: similar to Hypothetical
115 kDa protein in type I retrotransposable element R1DM
(ORF 2), partial; n=1; Tribolium castaneum|Rep:
PREDICTED: similar to Hypothetical 115 kDa protein in
type I retrotransposable element R1DM (ORF 2), partial -
Tribolium castaneum
Length = 2033
Score = 86.6 bits (205), Expect = 7e-16
Identities = 58/200 (29%), Positives = 95/200 (47%), Gaps = 1/200 (0%)
Frame = +1
Query: 46 HSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLDVQIRKAVGQW 225
H++S LNN+ RAPLKP Q+ +R ++IPR +G ++ LR D IR+ + +
Sbjct: 1837 HNLSVWLNNLRRAPLKPDQKCLFIRQYVIPRLLYGMQNPQVTSRVLREADRLIRRHLKTY 1896
Query: 226 LRLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGG-LDSSPWSVARAAAKSDKIR 402
L P + HA+V DGGL I +R IP + + R L+ + S + +S+++R
Sbjct: 1897 CHLNVHTPDSLIHASVSDGGLGIMELRKAIPRIFLGRLVKLLNKNKNSYLSSVLQSNRVR 1956
Query: 403 KKLRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWIRERCA 582
+ K V +T FWR + + + L + + S WI E+ +
Sbjct: 1957 TLM---GKLSTMAGEVPEST-------FWRNQIASGPLSKSLEQRAKDSASRLWISEKPS 2006
Query: 583 QITGRDFVQFVHTHINALPS 642
+GRD V+ V LP+
Sbjct: 2007 GWSGRDHVRAVQLRTGNLPT 2026
>UniRef50_Q03274 Cluster: Retrovirus-related Pol polyprotein from
type-1 retrotransposable element R2 (Retrovirus-related
Pol polyprotein from type I retrotransposable element
R2) [Includes: Reverse transcriptase (EC 2.7.7.49);
Endonuclease]; n=1; Popillia japonica|Rep:
Retrovirus-related Pol polyprotein from type-1
retrotransposable element R2 (Retrovirus-related Pol
polyprotein from type I retrotransposable element R2)
[Includes: Reverse transcriptase (EC 2.7.7.49);
Endonuclease] - Popillia japonica (Japanese beetle)
Length = 711
Score = 86.2 bits (204), Expect = 9e-16
Identities = 59/201 (29%), Positives = 98/201 (48%), Gaps = 2/201 (0%)
Frame = +1
Query: 46 HSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLDVQIRKAVGQW 225
+++S L + APLKP+Q+L ++R H++P+ +G +++ LR D IR V +
Sbjct: 334 YNLSRWLKCVEAAPLKPEQKLSLIREHVVPKLLYGLQNPSVTARTLRDADKLIRTTVKRC 393
Query: 226 LRLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSS-PWSVARAAAKS-DKI 399
L L P ++A V+DGGL + +R +IP +++ R SS P +VA + S D +
Sbjct: 394 LHLHLHTPNQCFYARVRDGGLGLTDLRRSIPRIMLDRINARRSSDPMAVALFSCPSFDHL 453
Query: 400 RKKLRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWIRERC 579
R +L V P FWRE + + L ++ P S WI +
Sbjct: 454 RGRL------------VALAGDVPPSH-FWREAIANHTTTKGLEAASDDPASRSWIFRKP 500
Query: 580 AQITGRDFVQFVHTHINALPS 642
+G+DFV+ +H LP+
Sbjct: 501 YGWSGKDFVRAIHLRTGNLPT 521
Score = 41.5 bits (93), Expect = 0.025
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +2
Query: 695 CRAGCKVRETTAHILQQCHRTHGGRILRHNKIVFFVAKAMEKNKWT 832
CR GC + T +H+LQ+C RI RHN+I +A WT
Sbjct: 534 CRGGCGKQATISHVLQRCPVVQPERIRRHNEIARKIAAHCRSKGWT 579
>UniRef50_Q03275 Cluster: Retrovirus-related Pol polyprotein from
type-1 retrotransposable element R2 (Retrovirus-related
Pol polyprotein from type I retrotransposable element
R2) [Includes: Reverse transcriptase (EC 2.7.7.49);
Endonuclease]; n=1; Popillia japonica|Rep:
Retrovirus-related Pol polyprotein from type-1
retrotransposable element R2 (Retrovirus-related Pol
polyprotein from type I retrotransposable element R2)
[Includes: Reverse transcriptase (EC 2.7.7.49);
Endonuclease] - Popillia japonica (Japanese beetle)
Length = 482
Score = 77.8 bits (183), Expect = 3e-13
Identities = 52/197 (26%), Positives = 93/197 (47%)
Frame = +1
Query: 52 ISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLDVQIRKAVGQWLR 231
+ + L + APLKP Q+L ++R H++ RF ++ L+ D +R +V + L
Sbjct: 97 LKTQLARVQSAPLKPAQKLTMIRDHVVARFLSCLQSVRVTLKALKDADRLVRLSVRKVLH 156
Query: 232 LPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWSVARAAAKSDKIRKKL 411
L P AY HA +++GGL I S+RA IP ++ R + ++ + + + K
Sbjct: 157 LNKSSPDAYIHAPIREGGLGIISLRAHIPAIMRSRLFKIATTADPLTATVLQIPAVEK-- 214
Query: 412 RWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWIRERCAQIT 591
++ L R++ + + ++R W L S G LR+ + S W+R +
Sbjct: 215 --FYQTLLRWTEGNGGS-TTNIRKEWGRKLQESYSGNGLRQGNTSGVSGDWLRNPPNFWS 271
Query: 592 GRDFVQFVHTHINALPS 642
G D++ V N LP+
Sbjct: 272 GADYIDAVRLRGNLLPT 288
Score = 44.0 bits (99), Expect = 0.005
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +2
Query: 695 CRAGCKVRETTAHILQQCHRTHGGRILRHNKIVFFVAKAMEKNKW 829
CRAGC E+ +H+LQ C TH I RH+++ + + EK W
Sbjct: 301 CRAGCNKTESLSHVLQGCPLTHWHPIRRHDRVAGRLRQIAEKKGW 345
>UniRef50_Q3C2G4 Cluster: Reverse transcriptase; n=1; Triops
longicaudatus|Rep: Reverse transcriptase - Triops
longicaudatus
Length = 491
Score = 74.1 bits (174), Expect = 4e-12
Identities = 53/210 (25%), Positives = 92/210 (43%), Gaps = 5/210 (2%)
Frame = +1
Query: 28 GCVTLEHSISS---ALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLDV 198
G V S+S AL ++ +APLKPQQ++ +LR HLIPRF H F L LD
Sbjct: 94 GAVDTRASVSKLRLALTSLMKAPLKPQQKVVMLRMHLIPRFIHTFTYSECYPKLLSQLDR 153
Query: 199 QIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWSVARA 378
+R+ + L+LP + +++ +++GGL I + + VR + S +
Sbjct: 154 LVRRWLKTALKLPTSLSSDFFYLPIKEGGLGIGKLYDIVGFAKVRLYNMFARSGDVCLQY 213
Query: 379 AAKSDKIRKKLRW--AWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPT 552
+ RW A K R + ++ VR R+ +V G +P
Sbjct: 214 LVDTQGSSMHARWCQAMKVSYRPPLAELNQRKIVVRDEGRDRFIKTVHGSGHEVFQSSPI 273
Query: 553 STKWIRERCAQITGRDFVQFVHTHINALPS 642
+ +W+ + + G F++ + N +P+
Sbjct: 274 TNQWLSGQTRIMRGSTFIRSIQMRTNTIPT 303
Score = 37.9 bits (84), Expect = 0.31
Identities = 20/44 (45%), Positives = 22/44 (50%)
Frame = +2
Query: 674 GGESSLTCRAGCKVRETTAHILQQCHRTHGGRILRHNKIVFFVA 805
G S TCR ET H+LQ C THG R RHN + VA
Sbjct: 310 GRNSVKTCRRCGLADETLIHVLQTCPITHGMRCQRHNNVCRKVA 353
>UniRef50_O44321 Cluster: Reverse transcriptase; n=1; Tenebrio
molitor|Rep: Reverse transcriptase - Tenebrio molitor
(Yellow mealworm)
Length = 469
Score = 73.7 bits (173), Expect = 5e-12
Identities = 56/205 (27%), Positives = 92/205 (44%)
Frame = +1
Query: 22 ASGCVTLEHSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLDVQ 201
++ C T + +S L I +APLKPQQ++ I++ +L+P + H ++ LR +D +
Sbjct: 89 STNCSTKD--LSEQLLRIKKAPLKPQQKINIIKTYLMPAYIHSMQNPAVNKKILREVDRK 146
Query: 202 IRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWSVARAA 381
IR V L LP + +A + GGL + S IP ++++R L + +
Sbjct: 147 IRMVVKGILHLPLHLSNTAIYAPAKMGGLGMFSFSRKIPIIVLKRLNNLSRTCSNFHLV- 205
Query: 382 AKSDKIRKKLRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTK 561
+R+ W +L++ R D TT+ R EH S G + S
Sbjct: 206 -----LREAAPWV-NRLKKMVRPDVTTKEQVDRANGVEH-EGSYYGGGTMQCRNDSASNT 258
Query: 562 WIRERCAQITGRDFVQFVHTHINAL 636
WI TG D+V+ V +N L
Sbjct: 259 WINTPPRYWTGSDYVKAVQLRLNCL 283
Score = 42.3 bits (95), Expect = 0.014
Identities = 20/46 (43%), Positives = 26/46 (56%)
Frame = +2
Query: 695 CRAGCKVRETTAHILQQCHRTHGGRILRHNKIVFFVAKAMEKNKWT 832
CRAGC E+ +H+LQ+C H R+ RHN IV + K WT
Sbjct: 298 CRAGCDRVESLSHVLQKCPLGHTMRMRRHNYIVKRLKTMALKKGWT 343
>UniRef50_Q05118 Cluster: Retrovirus-related Pol polyprotein from
type-1 retrotransposable element R2 (Retrovirus-related
Pol polyprotein from type I retrotransposable element
R2) [Includes: Reverse transcriptase (EC 2.7.7.49);
Endonuclease]; n=2; Popillia japonica|Rep:
Retrovirus-related Pol polyprotein from type-1
retrotransposable element R2 (Retrovirus-related Pol
polyprotein from type I retrotransposable element R2)
[Includes: Reverse transcriptase (EC 2.7.7.49);
Endonuclease] - Popillia japonica (Japanese beetle)
Length = 606
Score = 72.1 bits (169), Expect = 2e-11
Identities = 51/194 (26%), Positives = 88/194 (45%), Gaps = 4/194 (2%)
Frame = +1
Query: 46 HSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLDVQIRKAVGQW 225
++++ L N+ +APLKP Q+ IL+ HL+PR +G ++ L+ D R+ +
Sbjct: 219 YNLTRWLRNLEKAPLKPNQKFYILKTHLLPRLFYGLQSPGVTAGILQECDRLARRTTRKI 278
Query: 226 LRLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGL----DSSPWSVARAAAKSD 393
L + HA ++DGGL + +R IP ++ +R G L D++ WS
Sbjct: 279 FHLNVHTGSQFLHARIRDGGLGLVQMRYRIPCILSKRLGSLKQGNDTTNWS------DIF 332
Query: 394 KIRKKLRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWIRE 573
I R + ++R S + +WRE + L+++ +S W+
Sbjct: 333 NIEGPARSFYFRIRFLS------SKGDPDPYWREEIRTRPLSSGLQDAADDASSRSWLNT 386
Query: 574 RCAQITGRDFVQFV 615
TGRDFV+ V
Sbjct: 387 IPRGWTGRDFVRAV 400
Score = 51.2 bits (117), Expect = 3e-05
Identities = 23/46 (50%), Positives = 28/46 (60%)
Frame = +2
Query: 695 CRAGCKVRETTAHILQQCHRTHGGRILRHNKIVFFVAKAMEKNKWT 832
CR GC E+ +H+LQ C TH RI RHN++V VAK K WT
Sbjct: 422 CRNGCPRTESLSHVLQGCPLTHHERIKRHNELVAKVAKHARKKGWT 467
>UniRef50_O44318 Cluster: Reverse transcriptase; n=1; Limulus
polyphemus|Rep: Reverse transcriptase - Limulus
polyphemus (Atlantic horseshoe crab)
Length = 1168
Score = 68.9 bits (161), Expect = 1e-10
Identities = 42/130 (32%), Positives = 68/130 (52%)
Frame = +1
Query: 4 WVSIFEASGCVTLEHSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRL 183
W I TLE I+ NI+ +PLKP QR++IL + +PR + LG ++ L
Sbjct: 763 WTGINSGPVKPTLEKWIA----NITESPLKPHQRVDILCKYALPRLFYQLELGTLNFKEL 818
Query: 184 RMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPW 363
+ LD +++AV +W LPA ++ +DGGLA+ + + +P L ++ L S
Sbjct: 819 KELDSMVKQAVKRWCHLPACTADGLLYSRHRDGGLAVVKLESLVPCLKIKTNLRLVHSTD 878
Query: 364 SVARAAAKSD 393
V + A+SD
Sbjct: 879 PVISSLAESD 888
Score = 35.5 bits (78), Expect = 1.7
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +2
Query: 680 ESSLTCRAGCKVRETTAHILQQCHRTHGGRILRHNKI 790
+ S CR +RET H+ QC + RI RHNKI
Sbjct: 987 KDSAKCRGCTSMRETLCHLSGQCPKLKSMRIRRHNKI 1023
>UniRef50_Q3C2H0 Cluster: Reverse transcriptase; n=3; Mauremys
reevesii|Rep: Reverse transcriptase - Chinemys reevesii
(Reeve's turtle)
Length = 535
Score = 68.5 bits (160), Expect = 2e-10
Identities = 39/128 (30%), Positives = 62/128 (48%)
Frame = +1
Query: 40 LEHSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLDVQIRKAVG 219
L + + L I+RAPLKP +L +L + R + + L LD +IR+AV
Sbjct: 95 LSEKLDTWLERINRAPLKPSPKLAMLNTFTVSRVIYLADHTDCKIAHLSTLDDKIRRAVK 154
Query: 220 QWLRLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWSVARAAAKSDKI 399
+WL LPA+ + +A +DGGL + + + IP + RR + S R A ++ I
Sbjct: 155 EWLHLPANTCNGFLYARSRDGGLGVTRLASLIPSIQARRLHRIAHSKDETIRCIALANDI 214
Query: 400 RKKLRWAW 423
+ R W
Sbjct: 215 ESEYRKLW 222
Score = 39.9 bits (89), Expect = 0.077
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +2
Query: 647 FADREGVXVGGESSLT-CRAGCKVRETTAHILQQCHRTHGGRILRHNKIVFFVAKAMEKN 823
+ RE + G +S+ CR E+ +HIL QC G RI RHNK+ + + K
Sbjct: 324 YPTREYLGRGKSNSIVGCRHCSASYESLSHILGQCPAVQGARIRRHNKLCDILTREARKL 383
Query: 824 KW 829
+W
Sbjct: 384 QW 385
>UniRef50_Q3C2H1 Cluster: Reverse transcriptase; n=1; Oryzias
latipes|Rep: Reverse transcriptase - Oryzias latipes
(Medaka fish) (Japanese ricefish)
Length = 512
Score = 66.9 bits (156), Expect = 6e-10
Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 5/120 (4%)
Frame = +1
Query: 49 SISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLDVQIRKAVGQWL 228
++ + + IS APLKP QR+ +L + +PR + LG ++ +L +D +RKAV +WL
Sbjct: 94 TVHTWIERISEAPLKPSQRMRVLNSFALPRIIYQADLGKVTVTKLAQIDGIVRKAVKKWL 153
Query: 229 RLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSP--WS---VARAAAKSD 393
L ++ +DGGL + + IP + +R + SP W+ + + +KSD
Sbjct: 154 HLSPSTCNGLLYSRNRDGGLGLLKLERLIPSVRTKRIYRMSRSPDIWTRRMTSHSVSKSD 213
Score = 41.1 bits (92), Expect = 0.033
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 647 FADREGVXVGGESSLTCRAGCKVR-ETTAHILQQCHRTHGGRILRHNKIVFFVAKAMEKN 823
+ RE + G E S C R E+ +HIL QC RI RHNK+ +A E+
Sbjct: 305 YPTREFLARGKEKSGAACRRCPARLESCSHILGQCPFVQANRIARHNKVCVLLATEAERF 364
Query: 824 KWT 832
WT
Sbjct: 365 GWT 367
>UniRef50_Q76IN6 Cluster: Reverse transcriptase; n=5; Rasborinae|Rep:
Reverse transcriptase - Danio rerio (Zebrafish)
(Brachydanio rerio)
Length = 1193
Score = 65.3 bits (152), Expect = 2e-09
Identities = 39/117 (33%), Positives = 58/117 (49%)
Frame = +1
Query: 73 ISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLDVQIRKAVGQWLRLPADVPK 252
I ++ LKP Q++ IL IPR + G D L+ LD IRKAV +WL LP
Sbjct: 795 IGKSLLKPSQKVYILNQFAIPRLFYLADHGGAGDVMLQNLDGTIRKAVKKWLHLPPSTCN 854
Query: 253 AYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWSVARAAAKSDKIRKKLRWAW 423
+A +GGL I + IP + RR L +S + +A + ++ +K + AW
Sbjct: 855 GLLYARNCNGGLGICKLTRHIPSMQARRMFRLANSSDPLMKAMMRGSRVEQKFKKAW 911
Score = 36.7 bits (81), Expect = 0.72
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +2
Query: 680 ESSLTCRAGCKVRETTAHILQQCHRTHGGRILRHNKIVFFVAKAMEKNKW 829
++ CR E+++HIL +C G RI RHNKI + E W
Sbjct: 1015 KAGAACRRCSSRLESSSHILGKCPAVQGARIRRHNKICDLLKAEAETRGW 1064
>UniRef50_O44324 Cluster: Reverse transcriptase; n=1; Tenebrio
molitor|Rep: Reverse transcriptase - Tenebrio molitor
(Yellow mealworm)
Length = 488
Score = 64.5 bits (150), Expect = 3e-09
Identities = 52/199 (26%), Positives = 99/199 (49%), Gaps = 2/199 (1%)
Frame = +1
Query: 52 ISSALNNISRAPLKPQQRLEILR-AHLIPRFQHGFVLGNISDDRLRMLDVQIRKAVGQWL 228
++S +NN+ +APLKP Q+ +ILR + H ++S+ LR D +I++AV L
Sbjct: 109 LNSQINNLMKAPLKPWQKFKILRQTSDTIGWIHCLQSPSVSNKVLREADRKIKRAVKSIL 168
Query: 229 RLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGL-DSSPWSVARAAAKSDKIRK 405
LP + + +A+ +DGGL + IP ++ R+ L + + ++ +S++
Sbjct: 169 HLPVTIADSSIYASQRDGGLGVFCFSRKIPVILRSRWESLQEMADPALGAVLLQSERCMD 228
Query: 406 KLRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWIRERCAQ 585
++ + ++ R DS ++ +R L S G + + ++K++ A
Sbjct: 229 RVS---RLIKEDWRSDS-----EIKNSFRRSLENSWCGGGIHQVGIIKLASKYLLHPPAF 280
Query: 586 ITGRDFVQFVHTHINALPS 642
TGRD+V + +NALPS
Sbjct: 281 WTGRDYVSTIQLRLNALPS 299
Score = 43.2 bits (97), Expect = 0.008
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +2
Query: 695 CRAGCKVRETTAHILQQCHRTHGGRILRHNKIVFFVAKAMEKNKW 829
CR GC E+ +HILQ+C G RI RHN + + + E W
Sbjct: 312 CRTGCGRSESLSHILQRCGFVQGHRISRHNHVARKIRRLAESKGW 356
>UniRef50_Q76IN7 Cluster: Reverse transcriptase; n=1; Ciona
savignyi|Rep: Reverse transcriptase - Ciona savignyi
(Pacific transparent sea squirt)
Length = 445
Score = 58.4 bits (135), Expect = 2e-07
Identities = 29/91 (31%), Positives = 51/91 (56%)
Frame = +1
Query: 31 CVTLEHSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLDVQIRK 210
C ++IS AL + A LKPQQ++ +L+ HLIPR+++ + + L +D ++R+
Sbjct: 61 CRLQRNTISEALKRLMGAKLKPQQKIYMLKNHLIPRWRYSLSISEQTQQTLYWVDREVRR 120
Query: 211 AVGQWLRLPADVPKAYYHAAVQDGGLAIPSV 303
V + L P + + H ++GGL I S+
Sbjct: 121 TVKKILHAPGCLSDNFIHLDSRNGGLGICSM 151
Score = 41.5 bits (93), Expect = 0.025
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +2
Query: 656 REGVXVGGESSLTCRAGCKVRETT-AHILQQCHRTHGGRILRHNKIVFFVAKAMEKNKW 829
RE V G + C + E T +HILQ CHRT+ RI RHN ++ + + + + W
Sbjct: 261 REAVSRGRSGTNNICRNCGLEEETLSHILQNCHRTNKIRIHRHNAVLQILTQHLCRRNW 319
>UniRef50_Q9U8F6 Cluster: Reverse transcriptase; n=1; Nasonia
vitripennis|Rep: Reverse transcriptase - Nasonia
vitripennis (Parasitic wasp)
Length = 1265
Score = 55.6 bits (128), Expect = 1e-06
Identities = 41/197 (20%), Positives = 86/197 (43%), Gaps = 4/197 (2%)
Frame = +1
Query: 64 LNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLDVQIRKAVGQWLRLPAD 243
++ + R PLKP Q++++L+ ++ PR+ +G + + L+ +D IR + + L LP
Sbjct: 890 ISRVQRLPLKPMQKVDLLQMYIFPRYTYGLITSPPAKAVLKTIDRIIRTRIKEILHLPES 949
Query: 244 VPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWSVARAAAKSDKIRKKLRWAW 423
V ++ + + GGL + V + +R S V RAA S+ +L+
Sbjct: 950 VSSSFLYTPRKQGGLGLLEVEKMVLIPALRNGLRARQSHDPVTRAAMNSNAADDRLKSYA 1009
Query: 424 KQLR---RFSRVDSTTQRPSVRL-FWREHLHASVDGRELRESTRTPTSTKWIRERCAQIT 591
LR + + T + +RL + ++ + + E + P W+ +R +
Sbjct: 1010 DALRLHWPLTTEELDTYKYQLRLSYAQKWAEQKWQDQGVEEFAQDPVGNSWL-QRYDLLP 1068
Query: 592 GRDFVQFVHTHINALPS 642
++ + N P+
Sbjct: 1069 ASRYIDAIKLRTNTYPT 1085
>UniRef50_Q76IN8 Cluster: Reverse transcriptase; n=1; Ciona
intestinalis|Rep: Reverse transcriptase - Ciona
intestinalis (Transparent sea squirt)
Length = 806
Score = 52.4 bits (120), Expect = 1e-05
Identities = 26/89 (29%), Positives = 47/89 (52%)
Frame = +1
Query: 31 CVTLEHSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLDVQIRK 210
C I +L ++ + LKP+Q++ +LR+ LIPR+++ L ++ L +D +R
Sbjct: 673 CRIRRREIRESLLRLASSALKPEQKVFMLRSFLIPRWRYSVTLTRVTVSFLSWIDRVVRM 732
Query: 211 AVGQWLRLPADVPKAYYHAAVQDGGLAIP 297
V L P ++ + H ++ GGL IP
Sbjct: 733 RVRAILHAPHNLSSEWLHLSIAKGGLGIP 761
>UniRef50_Q3C2G6 Cluster: Reverse transcriptase; n=1; Hasarius
adansoni|Rep: Reverse transcriptase - Hasarius adansoni
Length = 484
Score = 50.0 bits (114), Expect = 7e-05
Identities = 27/93 (29%), Positives = 41/93 (44%)
Frame = +1
Query: 40 LEHSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLDVQIRKAVG 219
L + AL + A LKP Q+L + +A++ P F H L L LDV +R V
Sbjct: 94 LPANFEDALGRVKGAALKPYQKLHLWQAYIQPHFLHQLALAMPPRGALERLDVAVRAMVK 153
Query: 220 QWLRLPADVPKAYYHAAVQDGGLAIPSVRATIP 318
LP + + +DGGL + + +P
Sbjct: 154 SIFHLPRCITDGVLYCRPRDGGLGLQRLSQLVP 186
>UniRef50_Q76IM9 Cluster: Reverse transcriptase; n=1; Ciona
intestinalis|Rep: Reverse transcriptase - Ciona
intestinalis (Transparent sea squirt)
Length = 1540
Score = 39.1 bits (87), Expect = 0.14
Identities = 45/166 (27%), Positives = 68/166 (40%), Gaps = 1/166 (0%)
Frame = +1
Query: 88 LKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHA 267
L P Q+L L+ L+P + I+ L LD ++R+ + RL +A +H
Sbjct: 1117 LTPHQKLIALKRFLLPSLSFHLRVRPIARSELIALDRRVRECLRVAFRLTKPSCQAVFHT 1176
Query: 268 AVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWSVARAAAKSDKIRKKLRWAWKQLRRFSR 447
GL +PSV + L + + + +SP A A + R KL A +F
Sbjct: 1177 PTDMDGLGVPSVCSESSILTIAQGFKVLTSPDGTVSATASA---RVKLYAA-----KFGG 1228
Query: 448 VDSTTQRPSVRLFWREHLHA-SVDGRELRESTRTPTSTKWIRERCA 582
+ T PS W +L V+G R+ S W R RCA
Sbjct: 1229 L--TEAGPS---DWARYLSGDDVNGNSTRKPGANLPSGLWTRVRCA 1269
>UniRef50_A2QKI9 Cluster: Putative uncharacterized protein
precursor; n=1; Aspergillus niger|Rep: Putative
uncharacterized protein precursor - Aspergillus niger
Length = 201
Score = 38.7 bits (86), Expect = 0.18
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Frame = -3
Query: 334 ASQ*GPGWSLAPMGSLSRRPELRRDNMPWA----HPPVALATVRLLSGFGHRAFSIGHPR 167
AS GP S P + P+ R+ +PW HPP T+ + F H+A S+ PR
Sbjct: 78 ASFYGPSSSGIPSPLKHKIPQCSRNTLPWTRKKIHPPGTYNTINKQAWFMHQAHSLARPR 137
Query: 166 -CFQ-AQNRAGISESDELSKS 110
C A R G+ E++ +K+
Sbjct: 138 ICSSWASARNGVRENETSTKT 158
>UniRef50_UPI00004991CA Cluster: hypothetical protein 202.t00004;
n=2; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
protein 202.t00004 - Entamoeba histolytica HM-1:IMSS
Length = 410
Score = 37.5 bits (83), Expect = 0.41
Identities = 20/92 (21%), Positives = 43/92 (46%)
Frame = +1
Query: 31 CVTLEHSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLDVQIRK 210
C + + +SS L++++ + + +I + ++GF + L +D QIRK
Sbjct: 219 CTRILNDVSSILSSLNTMKYSILNTIRKINNDIISKLRYGFSIVKYKLGELEKIDKQIRK 278
Query: 211 AVGQWLRLPADVPKAYYHAAVQDGGLAIPSVR 306
+ Q ++PK+ + + + GL + S R
Sbjct: 279 LLIQLQLYSRNIPKSRLYVKINELGLGLMSAR 310
>UniRef50_Q49P01 Cluster: Reverse transcriptase-like protein; n=1;
Argas monolakensis|Rep: Reverse transcriptase-like
protein - Argas monolakensis
Length = 509
Score = 37.1 bits (82), Expect = 0.55
Identities = 19/42 (45%), Positives = 24/42 (57%)
Frame = +2
Query: 695 CRAGCKVRETTAHILQQCHRTHGGRILRHNKIVFFVAKAMEK 820
C +G ET HILQ C + HG RI RHN I VA+ + +
Sbjct: 346 CHSG---EETAVHILQFCEKVHGPRIERHNFICKQVARLVHQ 384
>UniRef50_Q4DIA4 Cluster: FG-GAP repeat protein, putative; n=2;
Trypanosoma cruzi|Rep: FG-GAP repeat protein, putative -
Trypanosoma cruzi
Length = 782
Score = 35.5 bits (78), Expect = 1.7
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Frame = -1
Query: 720 SLTLQPARQVNEDSPPTFTPSRSANAGWEGVDMSVHELHEVPSGYLRASLPNPLCG--CR 547
S LQ Q + PP+ PS N GW G D + S ++ +PN CG
Sbjct: 135 SNALQSKSQCDWGLPPSLEPSNHMNHGWGGHDEGKKSIPPSTSSHVFCIVPNCTCGDITA 194
Query: 546 GACGFAKFASINRCMQMFS 490
G F + C+ ++S
Sbjct: 195 EVGGTTIFLGAHNCIYVYS 213
>UniRef50_Q4SCG6 Cluster: Chromosome undetermined SCAF14653, whole
genome shotgun sequence; n=2; Tetraodontidae|Rep:
Chromosome undetermined SCAF14653, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 2351
Score = 35.1 bits (77), Expect = 2.2
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = -1
Query: 708 QPARQVNEDSPPTFTPSRSANAGWEGVDMSVHELHEVPSGYLRASLPNPLCG 553
QP E PP + S++ G EGVD++++ H S ++R S P G
Sbjct: 770 QPQVCSEEKQPPAYLRESSSHNGEEGVDLTLYSSHHQKSSFIRNSQNPPQSG 821
>UniRef50_Q76IN3 Cluster: Reverse transcriptase; n=142; Entamoeba
histolytica|Rep: Reverse transcriptase - Entamoeba
histolytica
Length = 801
Score = 35.1 bits (77), Expect = 2.2
Identities = 20/92 (21%), Positives = 43/92 (46%)
Frame = +1
Query: 31 CVTLEHSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLDVQIRK 210
C + + +SS L++++ + + + +I + ++GF + L +D QIRK
Sbjct: 397 CTRILNDVSSILSSLNTMKYSSLNTIRKINSDIISKLRYGFCIVPWKLGELEKIDKQIRK 456
Query: 211 AVGQWLRLPADVPKAYYHAAVQDGGLAIPSVR 306
++ Q ++PK+ + GL + S R
Sbjct: 457 SLIQLQLYSRNIPKSRLFVKKNELGLGLMSPR 488
>UniRef50_A7IJE3 Cluster: Flavoprotein involved in K+ transport-like
protein; n=1; Xanthobacter autotrophicus Py2|Rep:
Flavoprotein involved in K+ transport-like protein -
Xanthobacter sp. (strain Py2)
Length = 219
Score = 34.7 bits (76), Expect = 2.9
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -3
Query: 268 RRDNMP-WAHPPVALATVRLLSGFGHRAFSIGHP 170
RRD +P WAHPP A A ++LL G H A+ + P
Sbjct: 120 RRDGLPEWAHPPDAAALLKLLVG-PHEAYGLETP 152
>UniRef50_Q31EX1 Cluster: 2-oxoacid:acceptor oxidoreductase, beta
subunit; n=8; Proteobacteria|Rep: 2-oxoacid:acceptor
oxidoreductase, beta subunit - Thiomicrospira crunogena
(strain XCL-2)
Length = 288
Score = 34.3 bits (75), Expect = 3.8
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 5/115 (4%)
Frame = +1
Query: 40 LEHSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDD----RLRMLDVQIR 207
+ HS SS L IS +KP + L + P H F+L ++ +L + +
Sbjct: 1 MTHSSSSTLEKISVNTVKPTEYLSDIHPVWCPGCGHFFILRALTKALAWLKLPKEQIGLV 60
Query: 208 KAVGQWLRLPADVPKAYYHAAVQDGGLAIPS-VRATIPDLIVRRFGGLDSSPWSV 369
+G RLPA + +H V LA+ S ++A PDL V GG D +S+
Sbjct: 61 SGIGCSSRLPAYLNVYGFH-GVHGRALALASGLKANRPDLTVLVAGG-DGDGYSI 113
>UniRef50_Q7NJU1 Cluster: Carboxysome formation protein; n=20;
Bacteria|Rep: Carboxysome formation protein -
Gloeobacter violaceus
Length = 354
Score = 33.9 bits (74), Expect = 5.1
Identities = 21/41 (51%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +2
Query: 665 VXVGGESSLTCRAG-CKVRETTAHILQQCHRTH--GGRILR 778
V +GGE L C AG C V E+ A IL+ HR G RILR
Sbjct: 93 VEIGGEGPLVCMAGPCSV-ESEAMILETAHRVKAAGARILR 132
>UniRef50_UPI0000D9EC0F Cluster: PREDICTED: hypothetical protein;
n=1; Macaca mulatta|Rep: PREDICTED: hypothetical protein
- Macaca mulatta
Length = 219
Score = 33.5 bits (73), Expect = 6.7
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = -3
Query: 295 GSLSRRPELRRDNMPWAHPPVALATVRLLSGFGHRAFSIGHP 170
GS SR PE+R+ ++ ALA VR LS HR + P
Sbjct: 14 GSRSRLPEVRKSSLSQPLEVPALAPVRALSALAHRQLRVDRP 55
>UniRef50_Q6A960 Cluster: Phosphoribosyltransferase; n=2;
Actinomycetales|Rep: Phosphoribosyltransferase -
Propionibacterium acnes
Length = 588
Score = 33.5 bits (73), Expect = 6.7
Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Frame = -3
Query: 385 WRRLLP-LTMVTSRAPRNASQ*GPGWSLAPM--GSLSRRPELRRDNMPWAHPPVALATVR 215
W R +P + TS A R A+ GWSL L + RRD + H V V
Sbjct: 14 WDRPIPRIGDTTSSATRAAAP--TGWSLGDQVQQGLDTAIDTRRDIRRYRHDDVPKELVN 71
Query: 214 LLSGFGHRAFSIGH 173
+ GHRA S+GH
Sbjct: 72 TVLWAGHRAPSVGH 85
>UniRef50_Q7R1V1 Cluster: GLP_190_9582_12026; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_190_9582_12026 - Giardia lamblia
ATCC 50803
Length = 814
Score = 33.5 bits (73), Expect = 6.7
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +2
Query: 593 DGTSCSSCTLISTP-SHPAFADREGVXVGGESSLTCRAGCKVRETTAHILQQCHRTHGGR 769
DGT CT ST S A +EG + G S L C C+ ++ + Q C H G
Sbjct: 319 DGTPQDYCTSCSTTNSGMCAACKEGYYLDGGSCLVCPINCRTC-SSQYSCQTCLDGHSGT 377
Query: 770 ILRH 781
I H
Sbjct: 378 ICEH 381
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 936,226,088
Number of Sequences: 1657284
Number of extensions: 20664050
Number of successful extensions: 60738
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 57434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60707
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 72963732758
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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