Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_O08
         (837 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual    29   0.62 
SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|...    28   1.9  
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    27   3.3  
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    26   7.6  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   7.6  

>SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 273

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 16/65 (24%), Positives = 32/65 (49%)
 Frame = +1

Query: 370 ARAAAKSDKIRKKLRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTP 549
           A A   + +++++   A K+L+R S+      R  ++  +R+  HA+V      E  R+P
Sbjct: 3   ATAKKSAAQLQREEEEARKKLKRLSKQGGVEGRLPMKRLFRQRAHANVLSDHELEYPRSP 62

Query: 550 TSTKW 564
           +   W
Sbjct: 63  SEMDW 67


>SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 270

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = -3

Query: 493 LAKTSAQMVVALWSQHG*TCGAVSRPTAVSYESYQIWRRLLPLTMVTSRAPRNASQ 326
           L++     ++ LW Q G  C  ++    V+     +WRR   L  VT    R  SQ
Sbjct: 214 LSEEFLSKILKLWGQPGNKCWWINEVIKVNGSLINVWRRKQWLLEVTIMGNRENSQ 269


>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 417 PPQFLTNLIRFGGGSCH*PW*RVEPPETPHNEVRDG 310
           PP F+T++ + G  S H     V      HNEV DG
Sbjct: 237 PPNFVTSINKAGSSSDHGGELHVTYCPVDHNEVSDG 272


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +2

Query: 386 NLIRFVRNCGGPGNSSAGSAVLTPQRNDHL 475
           +L++  ++CG  G +  G  +L P  +DH+
Sbjct: 313 SLLQEAQSCGNQGVNFTGDEILVPISDDHV 342


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = +1

Query: 1   YWVSIFEASGCVTLEHSISSALNNISRAPLKPQQR--LEILR--AHLIPRFQH 147
           YW+S  E S C T E   S   N I  A   P     L+ LR  AH++  F+H
Sbjct: 222 YWISKCEISKCTTTEDIFSYLKNLIPSAEKSPAYNYILKPLRATAHVV-LFRH 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,686,415
Number of Sequences: 5004
Number of extensions: 77311
Number of successful extensions: 220
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)