Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_O08
(837 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0673 - 5491694-5493102,5493386-5493995 31 0.86
06_03_1133 - 27886823-27887088,27887837-27888629,27888674-27889000 31 1.1
01_06_1726 - 39461451-39461791,39462127-39462183,39462527-394626... 31 1.1
12_01_0913 + 8882193-8883510,8887633-8887865,8889619-8889871,889... 30 2.0
01_06_0901 - 32849722-32849745,32849788-32849856,32850817-328509... 30 2.6
01_06_0527 - 30018814-30019638 29 3.5
11_06_0742 - 26841041-26841314,26841678-26841775 29 4.6
01_06_0948 - 33242219-33242530,33242632-33242782,33242874-332431... 29 4.6
03_05_0979 - 29380899-29381063,29381157-29381210,29381451-293814... 29 6.1
03_05_0428 + 24152409-24152783,24152885-24153139,24153204-24153917 29 6.1
01_05_0740 - 24809951-24810394,24810622-24810700,24811651-248118... 29 6.1
09_06_0196 - 21481662-21481720,21481898-21483245 28 8.0
06_03_0404 - 20460555-20462135 28 8.0
06_01_0190 + 1475240-1475633,1475720-1476237 28 8.0
04_04_1299 + 32450998-32451134,32451575-32452304,32452856-324530... 28 8.0
04_04_0935 - 29509135-29511732 28 8.0
04_04_0179 - 23342764-23342973,23343185-23343340,23343535-233435... 28 8.0
04_03_0905 - 20722090-20722207,20722314-20722395,20722698-207228... 28 8.0
04_01_0508 + 6647812-6647820,6647864-6648226,6649351-6650673,665... 28 8.0
>11_01_0673 - 5491694-5493102,5493386-5493995
Length = 672
Score = 31.5 bits (68), Expect = 0.86
Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Frame = -1
Query: 639 WEGVDMSVHELHEVPSGYLRASLPNPL-----CGCRGACGFAKFASINRCMQMFSPKQAH 475
W + S E+H P L A P+P CG G C CM+ FS K
Sbjct: 214 WSQANQSWAEVHAEPWAQLYAQPPDPCTPFATCGPFGICN-GNSEQFCDCMESFSQKSPQ 272
Query: 474 RWSLR 460
W L+
Sbjct: 273 DWKLK 277
>06_03_1133 - 27886823-27887088,27887837-27888629,27888674-27889000
Length = 461
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +1
Query: 340 GGLDSSPWSVARAAAKSDKIRKKLRWAWKQLRRFSRVDSTTQRPSVRLFWREHL 501
GGL PW+ A D +R+ W +RR + + + S RL W HL
Sbjct: 24 GGLKKGPWTQAEDKLLVDHVRRHGEGNWNAVRRETGLQRCGK--SCRLRWANHL 75
>01_06_1726 -
39461451-39461791,39462127-39462183,39462527-39462674,
39462775-39463010,39463025-39463059,39463364-39463497
Length = 316
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +2
Query: 353 RHHGQWQEPPPNLIRFVRNCGG--PGNSSAGSAVLTPQRNDHLCACFGENICMHLLMDAN 526
R HG+++ L+R + C G P N++ G + R + +CF +++ L+DA
Sbjct: 243 RQHGRYELARRMLLRSLELCPGHAPANNNLGLVSIAEGRYEEAISCFEKSLQSDPLLDAA 302
Query: 527 FAN 535
+N
Sbjct: 303 KSN 305
>12_01_0913 +
8882193-8883510,8887633-8887865,8889619-8889871,
8891281-8891470,8891641-8891773,8891797-8891886
Length = 738
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -1
Query: 558 CGCRGACGF-AKFASINRCMQMFSPKQAHRWSLR 460
CG G C A SI RC++ FSP WS+R
Sbjct: 311 CGAFGLCDSNAGATSICRCVKGFSPASPAEWSMR 344
>01_06_0901 -
32849722-32849745,32849788-32849856,32850817-32850927,
32851002-32851259
Length = 153
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -3
Query: 334 ASQ*GPGWSLAPMGSLSRRPELRRDNMPWAHPPVALATVRLLSGFGH 194
AS P S++P + ++RP L D+ PW A +R + H
Sbjct: 20 ASTTAPASSVSPAAAAAKRPHLAGDDAPWRAAATGAAGIRPVPRIHH 66
>01_06_0527 - 30018814-30019638
Length = 274
Score = 29.5 bits (63), Expect = 3.5
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Frame = +2
Query: 440 SAVLTPQRNDHLCACFGENICMHLLMDAN--FANPHAPRHPQSGLGSDARR*PDGTSCSS 613
SA L P+ + AC+G + +L DAN F + H +G S+ P ++
Sbjct: 69 SAPLDPRVVAAIKACYGLGCDLRILSDANRFFIDTILDHHGLTGYFSEINTNPSAVDAAT 128
Query: 614 CTLISTPSHPAFADREGVXVG 676
L P H A G +G
Sbjct: 129 GRLRIAPYHDFHAGPHGCGLG 149
>11_06_0742 - 26841041-26841314,26841678-26841775
Length = 123
Score = 29.1 bits (62), Expect = 4.6
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +1
Query: 226 LRLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWSVARAAAKSDKIRK 405
+R P D A V D + P+ A +PDL++ R LD SP + + A + RK
Sbjct: 57 IRRPGDHRWPEMEANVTDRAASSPNRAAALPDLVILRL--LDGSPARPSLSQASAYPERK 114
Query: 406 KL 411
++
Sbjct: 115 RM 116
>01_06_0948 -
33242219-33242530,33242632-33242782,33242874-33243111,
33243196-33243298,33243323-33243406,33243640-33243815,
33243943-33244074,33248406-33248967,33249084-33249842
Length = 838
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 558 CGCRGACGFAKFASINRCMQMFSPKQAHRWSLRCG 454
CG G C + C++ F+PK W+LR G
Sbjct: 303 CGANGVCDTNNLP-VCSCLRGFTPKSPEAWALRDG 336
>03_05_0979 -
29380899-29381063,29381157-29381210,29381451-29381456,
29382167-29382280,29382379-29382422,29382540-29382615
Length = 152
Score = 28.7 bits (61), Expect = 6.1
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Frame = +2
Query: 344 GSTRHHGQWQEPPPNLIRFVRNCGGPGNSSAGSAVL--TPQRNDHLCACFGENICMHLLM 517
G HH Q +EPPP V GG G ++ A++ P R + CA G +
Sbjct: 26 GGELHHHQIKEPPPE----VEQTGGKGWAAMSEALIGSRPPRCEGKCAPCGRCEAVQEAF 81
Query: 518 DANFANPHAP 547
N A AP
Sbjct: 82 CTNSAIASAP 91
>03_05_0428 + 24152409-24152783,24152885-24153139,24153204-24153917
Length = 447
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +2
Query: 353 RHHGQWQEPPPNLIRFVRNCGGPGNSSAGSAVLTPQRNDHLCACFGENIC 502
RH Q QE N+ + G G +G A TP+ + +C+ +C
Sbjct: 204 RHQQQQQEAEENVKIVEVDTGFGGGGGSGEAHCTPRTSSRRSSCYATPLC 253
>01_05_0740 -
24809951-24810394,24810622-24810700,24811651-24811809,
24812083-24812246,24812436-24812624,24813151-24813408,
24813463-24813951,24814062-24814262,24814368-24814639,
24814661-24814685,24814776-24814937,24815065-24815104,
24815244-24815353,24815812-24815898,24816013-24816507
Length = 1057
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +1
Query: 418 AWKQLRRFSRVDSTTQRPSVRLFWREHLHAS--VDGRELRESTRTPTST 558
AW++ R + + +R FW+EHL S +D +L+E + P T
Sbjct: 607 AWEE-ERADEIANIKKRLEEEEFWKEHLQVSGWIDIMQLKERSEQPHGT 654
>09_06_0196 - 21481662-21481720,21481898-21483245
Length = 468
Score = 28.3 bits (60), Expect = 8.0
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -1
Query: 558 CGCRGACGFAKFASINRCMQMFSPKQAHRWS 466
CG G C +++ A C+ F P+ WS
Sbjct: 304 CGPYGYCYYSEVAPTCECLDGFEPRSKEEWS 334
>06_03_0404 - 20460555-20462135
Length = 526
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 205 RKAVGQWLRLPADVPKAYYHAAVQDGGLAIPS 300
R+A W+ A V + YY A D GLA P+
Sbjct: 140 RRAATAWVDSGATVGEMYYAVAKADAGLAFPA 171
>06_01_0190 + 1475240-1475633,1475720-1476237
Length = 303
Score = 28.3 bits (60), Expect = 8.0
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = -2
Query: 428 CFQ--AHRSFLRILSDLAAALATDHGDESSPP 339
CF AH S LR ++DLA A+A D GDE P
Sbjct: 103 CFHPLAHAS-LRHVADLAGAVAADIGDELQVP 133
>04_04_1299 +
32450998-32451134,32451575-32452304,32452856-32453053,
32453398-32454065,32454555-32454978,32455917-32456009,
32456101-32456295,32456378-32456470,32456718-32456930,
32457015-32457104,32457239-32457400
Length = 1000
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3
Query: 757 CSVTLL*DVSRRLPNLATSTAGQR 686
C V L SRR PN+A +T+GQR
Sbjct: 881 CEVYTLLGRSRRFPNMAHATSGQR 904
>04_04_0935 - 29509135-29511732
Length = 865
Score = 28.3 bits (60), Expect = 8.0
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Frame = +1
Query: 349 DSSPWSVARAA-AKSDKIRKKLRWAWKQLRRFSRVDSTTQRPSV----RLF---WREHLH 504
D W++ AA ++S ++R+ L + R+ R+DSTT S+ RLF W + LH
Sbjct: 234 DVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLH 293
Query: 505 ASV 513
A V
Sbjct: 294 AKV 296
>04_04_0179 - 23342764-23342973,23343185-23343340,23343535-23343593,
23344150-23344226,23344309-23344587,23344800-23344885,
23344960-23345027,23345721-23345904,23346071-23346204,
23346776-23347039,23347613-23347677,23347833-23348407,
23348501-23348680,23348765-23348928,23349008-23349261,
23349405-23349562,23349808-23349948,23350176-23350282,
23350651-23350737,23350812-23350901,23350974-23351055,
23351370-23351561,23351748-23351816,23351959-23352294,
23352694-23352837,23352963-23353126,23353817-23353883
Length = 1463
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 455 PQRNDHLCACFGENICMHLLMDANFANPHAPRHPQSG 565
P+ HLC+ N C+ L ++ A HA H G
Sbjct: 1358 PRGASHLCSLLAGNCCLRLTLEDPTARIHAYIHKDDG 1394
>04_03_0905 -
20722090-20722207,20722314-20722395,20722698-20722851,
20723026-20723089,20724282-20724404,20725326-20725452,
20725541-20726171
Length = 432
Score = 28.3 bits (60), Expect = 8.0
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = -2
Query: 500 RCSRQNKRTDGRCVVESTRLNLR--SCFQAHRSFLRILSDLA 381
R Q +R GRC RLNL C+Q H L L D A
Sbjct: 195 RAPPQERRRGGRCTCGVARLNLPFVRCYQTHYLELWTLEDWA 236
>04_01_0508 +
6647812-6647820,6647864-6648226,6649351-6650673,
6653569-6653766,6654485-6654568,6655175-6655920,
6656480-6657341
Length = 1194
Score = 28.3 bits (60), Expect = 8.0
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 335 VSGGSTRHHGQ-WQEPPPNLIRFVRNCGGPGNSSAGSAVLTP 457
V+ ST+H Q W+E N ++F RNC SS S++ TP
Sbjct: 555 VARKSTKHATQTWREKLKNTVKFARNC--IHISSVNSSLPTP 594
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,119,284
Number of Sequences: 37544
Number of extensions: 646755
Number of successful extensions: 2042
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2040
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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