Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_O08
(837 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10715| Best HMM Match : No HMM Matches (HMM E-Value=.) 108 5e-24
SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22) 98 9e-21
SB_21856| Best HMM Match : RVT_1 (HMM E-Value=4.5e-32) 93 3e-19
SB_50245| Best HMM Match : RVT_1 (HMM E-Value=1.4e-16) 52 4e-07
SB_12134| Best HMM Match : Toxin_4 (HMM E-Value=1.3) 43 3e-04
SB_50062| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_893| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.031
SB_18870| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.38
SB_35833| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_7422| Best HMM Match : Keratin_B2 (HMM E-Value=0.1) 31 1.5
SB_58110| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_11301| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_28768| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_57731| Best HMM Match : Vicilin_N (HMM E-Value=8.2) 29 6.2
SB_47253| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_41768| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_40022| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_36336| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_35096| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_24849| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_17596| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_16271| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_15711| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_13940| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_13227| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_10161| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_3184| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_57385| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_56490| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_54119| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_52963| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_50392| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_50350| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_31920| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_31170| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_30092| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_28366| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_25308| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_24745| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_20989| Best HMM Match : CRA_rpt (HMM E-Value=7.1) 29 6.2
SB_16467| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_15251| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_13875| Best HMM Match : rve (HMM E-Value=4.5e-15) 29 6.2
SB_7233| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_2618| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_2233| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=0.43) 29 6.2
SB_1146| Best HMM Match : TFIIB (HMM E-Value=0.0016) 29 6.2
SB_1101| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_5758| Best HMM Match : fn3 (HMM E-Value=6.6e-18) 28 8.2
>SB_10715| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 896
Score = 108 bits (260), Expect = 5e-24
Identities = 67/200 (33%), Positives = 104/200 (52%), Gaps = 3/200 (1%)
Frame = +1
Query: 52 ISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLDVQIRKAVGQWLR 231
++ L+NISRAPLKP QRL ILR H IP+F H VL + LR D IR AV WL+
Sbjct: 250 LNQGLSNISRAPLKPFQRLTILREHFIPQFLHQLVLTPVFAVFLRWFDNSIRSAVKSWLK 309
Query: 232 LPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWSVARAAAKSDKIRKKL 411
+P D A+++A + DGGL IP + + IP L RF + ++ ++++A + R L
Sbjct: 310 VPKDTINAFFYARIADGGLGIPLLTSKIPLLKKSRFENVFNACDAISKALSVDLYFRSNL 369
Query: 412 -RWAWKQLRRFSRVDS--TTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWIRERCA 582
+W+ + VD + + S + L++ +DGR L E P ++ W+ +
Sbjct: 370 EKWSKPVV-----VDGFPISDKSSYNAAFASALYSKIDGRGLSECNLCPEASNWVLNPPS 424
Query: 583 QITGRDFVQFVHTHINALPS 642
+GR F+ + L S
Sbjct: 425 FQSGRKFIGAIRARAGVLYS 444
Score = 41.5 bits (93), Expect = 8e-04
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +2
Query: 692 TCRAGCKVRETTAHILQQCHRTHGGRILRHNKIVFFVAKAMEK 820
+C A C+ T H++Q C RT G RI RHN + F+ K+ EK
Sbjct: 458 SCDA-CRRPATAQHMVQVCPRTSGPRICRHNNVADFIRKSAEK 499
>SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)
Length = 1797
Score = 97.9 bits (233), Expect = 9e-21
Identities = 46/96 (47%), Positives = 62/96 (64%)
Frame = +1
Query: 52 ISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLDVQIRKAVGQWLR 231
++ L NI+RAPLKP QRL +L+ + +PRF H VL ++D LR D +R A WL+
Sbjct: 869 LTEGLKNITRAPLKPHQRLILLKTYFLPRFMHQLVLAPVNDGFLRWFDNCVRAACRSWLK 928
Query: 232 LPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRF 339
LP D A++HAA+ DGGL IPS+R +P L RF
Sbjct: 929 LPHDTCMAFFHAAILDGGLGIPSLRYLVPLLKRDRF 964
>SB_21856| Best HMM Match : RVT_1 (HMM E-Value=4.5e-32)
Length = 583
Score = 92.7 bits (220), Expect = 3e-19
Identities = 45/100 (45%), Positives = 63/100 (63%), Gaps = 1/100 (1%)
Frame = +1
Query: 22 ASGCVTLEHS-ISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLDV 198
A G E++ AL+N+SRAPLKPQQRL +L+ +L+P+ H VL + L LD
Sbjct: 294 AQGVKAAEYNAFKEALDNLSRAPLKPQQRLFLLKTYLLPQLHHSLVLSRTTGKLLNSLDA 353
Query: 199 QIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRATIP 318
+RKAV WL+LP D +A+++A DGGL +PS+ IP
Sbjct: 354 LVRKAVRGWLKLPHDTHRAFFYAHQADGGLNVPSLYHLIP 393
>SB_50245| Best HMM Match : RVT_1 (HMM E-Value=1.4e-16)
Length = 311
Score = 52.4 bits (120), Expect = 4e-07
Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = +1
Query: 22 ASGCVTLEHS-ISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLD 195
A G E++ AL+N+SRAPLKPQQRL +L+ +L+P+ H VL + L LD
Sbjct: 251 AQGVKAAEYNAFKEALDNLSRAPLKPQQRLFMLKTYLLPQLHHSLVLSRTTGKLLNSLD 309
>SB_12134| Best HMM Match : Toxin_4 (HMM E-Value=1.3)
Length = 210
Score = 43.2 bits (97), Expect = 3e-04
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +2
Query: 674 GGESSLTC--RAGCKVRETTAHILQQCHRTHGGRILRHNKIVFFVAKAMEKNKW 829
G S+ C R + ++ H+LQ C RT G RI RHN ++ +AKA +W
Sbjct: 28 GVNSNCDCCGRGQPRPQQFLGHVLQTCPRTWGSRISRHNHVLSLIAKACRSRRW 81
>SB_50062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 39.1 bits (87), Expect = 0.004
Identities = 18/50 (36%), Positives = 31/50 (62%)
Frame = +2
Query: 683 SSLTCRAGCKVRETTAHILQQCHRTHGGRILRHNKIVFFVAKAMEKNKWT 832
+++ C + C ++ H++Q C ++HG RI RH+ IV F+AKA + T
Sbjct: 125 ANVNCES-CLRPQSAQHMVQICPKSHGARIRRHDGIVEFLAKAATRKGLT 173
>SB_893| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 236
Score = 36.3 bits (80), Expect = 0.031
Identities = 15/27 (55%), Positives = 21/27 (77%)
Frame = +2
Query: 731 HILQQCHRTHGGRILRHNKIVFFVAKA 811
H++Q C ++HG RI RH+ IV F+AKA
Sbjct: 1 HMVQICPKSHGARIRRHDGIVEFLAKA 27
>SB_18870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1352
Score = 32.7 bits (71), Expect = 0.38
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 734 ILQQCHRTHGGRILRHNKIVFFVAKAMEK 820
+ + HRT G RI RHN + F+ K+ EK
Sbjct: 618 LCRYAHRTPGPRICRHNNVADFIRKSAEK 646
>SB_35833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1032
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +1
Query: 22 ASGCVTLEHSI-SSALNNISRAPLKPQQRL 108
A G E+ + AL N+SRA LKPQQRL
Sbjct: 48 AQGAKAAEYKVLKEALYNLSRARLKPQQRL 77
>SB_7422| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)
Length = 136
Score = 30.7 bits (66), Expect = 1.5
Identities = 22/78 (28%), Positives = 33/78 (42%)
Frame = +1
Query: 364 SVARAAAKSDKIRKKLRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTR 543
++ + +K K RW + RRF RV +PS R F+R R R S
Sbjct: 23 TIENTFCRRNKNGMKYRWKYPSSRRFYRVSCV--QPSFRRFYRVSC-VLPSPRSYRVSCV 79
Query: 544 TPTSTKWIRERCAQITGR 597
P+ ++ R C Q + R
Sbjct: 80 LPSPRRFYRVSCVQPSPR 97
>SB_58110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 98
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +2
Query: 518 DANFANPHAPRHPQSGLGSDARR*PDGTSCSSCTLISTPSHPAFAD 655
D A HAP+ P+SG G D RR + S P PA D
Sbjct: 43 DGTLAERHAPQAPRSGPGHDKRRTVTVRARESKPTFPPPLKPALTD 88
>SB_11301| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 385
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/63 (26%), Positives = 23/63 (36%)
Frame = +2
Query: 599 TSCSSCTLISTPSHPAFADREGVXVGGESSLTCRAGCKVRETTAHILQQCHRTHGGRILR 778
T C L +TP + + C++ C +TT H CH TH R
Sbjct: 90 TPCKDKLLHNTPCKEQLSHNTPCKEQLSHNTPCKSSC---QTTHHARSSCHTTHSARSSC 146
Query: 779 HNK 787
H K
Sbjct: 147 HTK 149
>SB_28768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 518 DANFANPHAPRHPQSGLGSDARR 586
D A HAP+ P+SG G+D RR
Sbjct: 86 DGTLAERHAPQAPRSGPGNDKRR 108
>SB_57731| Best HMM Match : Vicilin_N (HMM E-Value=8.2)
Length = 196
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 518 DANFANPHAPRHPQSGLGSDARR 586
D A HAP+ P+SG G D RR
Sbjct: 153 DGTLAERHAPQAPRSGPGHDKRR 175
>SB_47253| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 518 DANFANPHAPRHPQSGLGSDARR 586
D A HAP+ P+SG G D RR
Sbjct: 86 DGTLAERHAPQAPRSGPGHDKRR 108
>SB_41768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 86
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 518 DANFANPHAPRHPQSGLGSDARR 586
D A HAP+ P+SG G D RR
Sbjct: 43 DGTLAERHAPQAPRSGPGHDKRR 65
>SB_40022| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 518 DANFANPHAPRHPQSGLGSDARR 586
D A HAP+ P+SG G D RR
Sbjct: 86 DGTLAERHAPQAPRSGPGHDKRR 108
>SB_36336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 123
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 518 DANFANPHAPRHPQSGLGSDARR 586
D A HAP+ P+SG G D RR
Sbjct: 80 DGTLAERHAPQAPRSGPGHDKRR 102
>SB_35096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 86
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 518 DANFANPHAPRHPQSGLGSDARR 586
D A HAP+ P+SG G D RR
Sbjct: 43 DGTLAERHAPQAPRSGPGHDKRR 65
>SB_24849| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 96
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 518 DANFANPHAPRHPQSGLGSDARR 586
D A HAP+ P+SG G D RR
Sbjct: 53 DGTLAERHAPQAPRSGPGHDKRR 75
>SB_17596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 518 DANFANPHAPRHPQSGLGSDARR 586
D A HAP+ P+SG G D RR
Sbjct: 86 DGTLAERHAPQAPRSGPGHDKRR 108
>SB_16271| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 83
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 518 DANFANPHAPRHPQSGLGSDARR 586
D A HAP+ P+SG G D RR
Sbjct: 40 DGTLAERHAPQAPRSGPGHDKRR 62
>SB_15711| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 518 DANFANPHAPRHPQSGLGSDARR 586
D A HAP+ P+SG G D RR
Sbjct: 86 DGTLAERHAPQAPRSGPGHDKRR 108
>SB_13940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 518 DANFANPHAPRHPQSGLGSDARR 586
D A HAP+ P+SG G D RR
Sbjct: 86 DGTLAERHAPQAPRSGPGHDKRR 108
>SB_13227| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 81
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 518 DANFANPHAPRHPQSGLGSDARR 586
D A HAP+ P+SG G D RR
Sbjct: 43 DGTLAERHAPQAPRSGPGHDKRR 65
>SB_10161| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 77
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 518 DANFANPHAPRHPQSGLGSDARR 586
D A HAP+ P+SG G D RR
Sbjct: 43 DGTLAERHAPQAPRSGPGHDKRR 65
>SB_3184| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 518 DANFANPHAPRHPQSGLGSDARR 586
D A HAP+ P+SG G D RR
Sbjct: 86 DGTLAERHAPQAPRSGPGHDKRR 108
>SB_57385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 518 DANFANPHAPRHPQSGLGSDARR 586
D A HAP+ P+SG G D RR
Sbjct: 86 DGTLAERHAPQAPRSGPGHDKRR 108
>SB_56490| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 86
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 518 DANFANPHAPRHPQSGLGSDARR 586
D A HAP+ P+SG G D RR
Sbjct: 43 DGTLAERHAPQAPRSGPGHDKRR 65
>SB_54119| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 518 DANFANPHAPRHPQSGLGSDARR 586
D A HAP+ P+SG G D RR
Sbjct: 86 DGTLAERHAPQAPRSGPGHDKRR 108
>SB_52963| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 518 DANFANPHAPRHPQSGLGSDARR 586
D A HAP+ P+SG G D RR
Sbjct: 86 DGTLAERHAPQAPRSGPGHDKRR 108
>SB_50392| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 518 DANFANPHAPRHPQSGLGSDARR 586
D A HAP+ P+SG G D RR
Sbjct: 40 DGTLAERHAPQAPRSGPGHDKRR 62
>SB_50350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 518 DANFANPHAPRHPQSGLGSDARR 586
D A HAP+ P+SG G D RR
Sbjct: 86 DGTLAERHAPQAPRSGPGHDKRR 108
>SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1143
Score = 28.7 bits (61), Expect = 6.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 448 VDSTTQRPSVRLFWREHLHASVDGREL 528
++ RPS RL WR H H+ +D ++L
Sbjct: 281 LEENDHRPS-RLHWRNHQHSKLDSKQL 306
>SB_31920| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 518 DANFANPHAPRHPQSGLGSDARR 586
D A HAP+ P+SG G D RR
Sbjct: 86 DGTLAERHAPQAPRSGPGHDKRR 108
>SB_31170| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 81
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 518 DANFANPHAPRHPQSGLGSDARR 586
D A HAP+ P+SG G D RR
Sbjct: 43 DGTLAERHAPQAPRSGPGHDKRR 65
>SB_30092| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 86
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 518 DANFANPHAPRHPQSGLGSDARR 586
D A HAP+ P+SG G D RR
Sbjct: 43 DGTLAERHAPQAPRSGPGHDKRR 65
>SB_28366| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 518 DANFANPHAPRHPQSGLGSDARR 586
D A HAP+ P+SG G D RR
Sbjct: 86 DGTLAERHAPQAPRSGPGHDKRR 108
>SB_25308| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 518 DANFANPHAPRHPQSGLGSDARR 586
D A HAP+ P+SG G D RR
Sbjct: 86 DGTLAERHAPQAPRSGPGHDKRR 108
>SB_24745| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 518 DANFANPHAPRHPQSGLGSDARR 586
D A HAP+ P+SG G D RR
Sbjct: 86 DGTLAERHAPQAPRSGPGHDKRR 108
>SB_20989| Best HMM Match : CRA_rpt (HMM E-Value=7.1)
Length = 138
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 518 DANFANPHAPRHPQSGLGSDARR 586
D A HAP+ P+SG G D RR
Sbjct: 43 DGTLAERHAPQAPRSGPGHDKRR 65
>SB_16467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 86
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 518 DANFANPHAPRHPQSGLGSDARR 586
D A HAP+ P+SG G D RR
Sbjct: 43 DGTLAERHAPQAPRSGPGHDKRR 65
>SB_15251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 86
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 518 DANFANPHAPRHPQSGLGSDARR 586
D A HAP+ P+SG G D RR
Sbjct: 43 DGTLAERHAPQAPRSGPGHDKRR 65
>SB_13875| Best HMM Match : rve (HMM E-Value=4.5e-15)
Length = 1216
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Frame = +1
Query: 139 FQHGFVLGNISDDRLRMLD-VQ------IRKAVGQWLRLPADVPKAYYHAAVQDGGLAIP 297
FQ +V N++D RL+++D +Q KA + R +PK Y ++ + DG L +
Sbjct: 546 FQDMYVYTNVADARLQVIDKIQDTNAEVCLKAEPKTKRESPSIPKQYVYSNLSDGNLVLG 605
Query: 298 S 300
S
Sbjct: 606 S 606
>SB_7233| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 86
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 518 DANFANPHAPRHPQSGLGSDARR 586
D A HAP+ P+SG G D RR
Sbjct: 43 DGTLAERHAPQAPRSGPGHDKRR 65
>SB_2618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 518 DANFANPHAPRHPQSGLGSDARR 586
D A HAP+ P+SG G D RR
Sbjct: 86 DGTLAERHAPQAPRSGPGHDKRR 108
>SB_2233| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=0.43)
Length = 263
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Frame = -1
Query: 588 YLRASLPNPLCGCRGACG--FAKFASINRC---MQMFSPKQAHRWSLRCGVN 448
Y + LP CGC CG + K N+C +QM+ +CG+N
Sbjct: 22 YYKCGLPYYKCGCYNKCGLPYYKCGRYNKCGRLLQMWKAITNVEGYYKCGLN 73
>SB_1146| Best HMM Match : TFIIB (HMM E-Value=0.0016)
Length = 352
Score = 28.7 bits (61), Expect = 6.2
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 436 RFSRVDSTTQRPSV-RLFWREHLHASVDGRELRESTRTPTSTKWIRERCAQITGRDF 603
RFS S TQ+ V RL++R H+S R +S + WIR++ IT ++F
Sbjct: 275 RFSA--SLTQKEEVVRLYYRTKNHSSKLNRARPQSFAAALTYYWIRQKKIDITLKNF 329
>SB_1101| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 86
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 518 DANFANPHAPRHPQSGLGSDARR 586
D A HAP+ P+SG G D RR
Sbjct: 43 DGTLAERHAPQAPRSGPGHDKRR 65
>SB_5758| Best HMM Match : fn3 (HMM E-Value=6.6e-18)
Length = 1191
Score = 28.3 bits (60), Expect = 8.2
Identities = 23/100 (23%), Positives = 44/100 (44%)
Frame = +1
Query: 331 RRFGGLDSSPWSVARAAAKSDKIRKKLRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHAS 510
+R GG DS SV + KS+ + +K A + ++ QR +R+ E HAS
Sbjct: 236 KRDGGADSGSLSV-EYSVKSEPLHRKEEEADNGFVS-GLIGTSGQRDRLRMEQLEQYHAS 293
Query: 511 VDGRELRESTRTPTSTKWIRERCAQITGRDFVQFVHTHIN 630
++ ++E + + R++ + DF H++
Sbjct: 294 LNEDRIKEQKKEEEKVRLRRKKKVREPDEDFFTVKVRHLS 333
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,911,308
Number of Sequences: 59808
Number of extensions: 661680
Number of successful extensions: 2203
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 1997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2202
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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