Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_O08
         (837 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein ( Dros...   123   3e-28

>X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein (
            Drosophila melanogasterDNA for type II retrotransposable
            element  R2Dm.  ).
          Length = 1057

 Score =  123 bits (296), Expect = 3e-28
 Identities = 75/211 (35%), Positives = 106/211 (50%), Gaps = 2/211 (0%)
 Frame = +1

Query: 16   FEASGCVTLE--HSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRM 189
            F A+G V       I   L  +++APLKPQQRL  LR  LIP+  H   LG+++   LR 
Sbjct: 660  FTATGRVRCNPAEDIGPKLQRLTKAPLKPQQRLFALRTVLIPQLYHKLALGSVAIGVLRK 719

Query: 190  LDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWSV 369
             D  IR  V +WL LP DVP A+ HA  + GGL IPS+R   P L +RR   +   P   
Sbjct: 720  TDKLIRYYVRRWLNLPLDVPIAFVHAPPKSGGLGIPSLRWVAPMLRLRRLSNI-KWPHLT 778

Query: 370  ARAAAKSDKIRKKLRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTP 549
                A S    +K R    + R  +  +    RP++  +W   L+ SVDG  LRE     
Sbjct: 779  QNEVASSFLEAEKQR---ARDRLLAEQNELLSRPAIEKYWANKLYLSVDGSGLREGGHYG 835

Query: 550  TSTKWIRERCAQITGRDFVQFVHTHINALPS 642
                W+ +    +TG++++  +   INALP+
Sbjct: 836  PQHGWVSQPTRLLTGKEYMDGIRLRINALPT 866



 Score = 55.6 bits (128), Expect = 8e-08
 Identities = 21/42 (50%), Positives = 31/42 (73%)
 Frame = +2

Query: 695  CRAGCKVRETTAHILQQCHRTHGGRILRHNKIVFFVAKAMEK 820
            CRAGC   ETT HI+Q+C+R+HG R+ RHN +V  + + +E+
Sbjct: 881  CRAGCDAPETTNHIMQKCYRSHGRRVARHNCVVNRIKRGLEE 922


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,489,833
Number of Sequences: 53049
Number of extensions: 1030284
Number of successful extensions: 3044
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3043
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3983256888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)