Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_O08
(837 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64600-3|AAK39204.1| 656|Caenorhabditis elegans Temporarily ass... 31 1.0
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 31 1.3
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 31 1.3
Z71185-5|CAA94911.1| 1078|Caenorhabditis elegans Hypothetical pr... 29 4.1
U97407-6|AAB52481.1| 751|Caenorhabditis elegans Tyrosinase prot... 29 4.1
Z82089-1|CAB05002.1| 983|Caenorhabditis elegans Hypothetical pr... 29 5.4
Z81511-2|CAB04167.1| 983|Caenorhabditis elegans Hypothetical pr... 29 5.4
Z36237-1|CAA85271.2| 619|Caenorhabditis elegans Hypothetical pr... 29 5.4
U13076-1|AAA96984.1| 463|Caenorhabditis elegans steroid hormone... 29 5.4
AY204167-1|AAO39171.1| 619|Caenorhabditis elegans nuclear recep... 29 5.4
AF273770-1|AAG15119.1| 469|Caenorhabditis elegans nuclear recep... 29 5.4
AF083224-1|AAD03682.1| 619|Caenorhabditis elegans nuclear recep... 29 5.4
AL031635-1|CAA21039.2| 487|Caenorhabditis elegans Hypothetical ... 28 7.2
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu... 28 9.5
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein. 28 9.5
>U64600-3|AAK39204.1| 656|Caenorhabditis elegans Temporarily
assigned gene nameprotein 312 protein.
Length = 656
Score = 31.1 bits (67), Expect = 1.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 442 SRVDSTTQRPSVRLFWREHLHASVD 516
S DST+ RP++R+F EH H+ D
Sbjct: 100 SESDSTSSRPAIRVFDEEHYHSESD 124
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 332 GVSGGSTRHHGQWQEPPPNLIRFVRNCGGPGNSSAG 439
G GGS + H Q Q+ P I+++ G GN+ G
Sbjct: 2124 GGGGGSQQPHQQQQQQPQQRIQYIPQVTGSGNNGGG 2159
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 332 GVSGGSTRHHGQWQEPPPNLIRFVRNCGGPGNSSAG 439
G GGS + H Q Q+ P I+++ G GN+ G
Sbjct: 2124 GGGGGSQQPHQQQQQQPQQRIQYIPQVTGSGNNGGG 2159
>Z71185-5|CAA94911.1| 1078|Caenorhabditis elegans Hypothetical
protein C35A5.8 protein.
Length = 1078
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 73 ISRAPLKPQQRLEILRAHLIPRFQHGFVLGNIS 171
I+R PLK RLE+ H++ +F+ +++ I+
Sbjct: 523 IARFPLKGNLRLEVSFIHMLEQFRRAYIMDQIT 555
>U97407-6|AAB52481.1| 751|Caenorhabditis elegans Tyrosinase protein
4 protein.
Length = 751
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 404 RNCGGPGNSSAGSAVLTPQRNDHLCACFGENIC 502
+ CGG G + + Q+ D+ CF EN+C
Sbjct: 542 QECGGGGTTVTTTTPAPAQQCDNSDGCFNENVC 574
>Z82089-1|CAB05002.1| 983|Caenorhabditis elegans Hypothetical
protein ZK270.1 protein.
Length = 983
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +1
Query: 211 AVGQWLRLPADVPKAYYHAAVQDGGLAIPSVR 306
++G + +PA V YY A++Q+G ++ PS R
Sbjct: 843 SIGFSVDIPAHVSYHYYQASIQEGPMSPPSSR 874
>Z81511-2|CAB04167.1| 983|Caenorhabditis elegans Hypothetical
protein ZK270.1 protein.
Length = 983
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +1
Query: 211 AVGQWLRLPADVPKAYYHAAVQDGGLAIPSVR 306
++G + +PA V YY A++Q+G ++ PS R
Sbjct: 843 SIGFSVDIPAHVSYHYYQASIQEGPMSPPSSR 874
>Z36237-1|CAA85271.2| 619|Caenorhabditis elegans Hypothetical
protein C48D5.1 protein.
Length = 619
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Frame = +2
Query: 293 SHRCERPSRTSL*GVSGGSTRHHGQWQEPPPNLIRFVRNCGGPGNSSAGSAVLTPQRN-- 466
S R + + +S G + H PP L F+R+ P N S ++ P
Sbjct: 203 SRRGSQGTTSSSNNTGGTPSPHSSSLPTSPPQLQGFLRSFLNPDNLSTPTSFGVPSETAL 262
Query: 467 --DHLCA-CFGENICMH 508
D +CA C +C+H
Sbjct: 263 DADKMCAVCNDRAVCLH 279
>U13076-1|AAA96984.1| 463|Caenorhabditis elegans steroid hormone
receptor familymember CNR8 protein.
Length = 463
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Frame = +2
Query: 293 SHRCERPSRTSL*GVSGGSTRHHGQWQEPPPNLIRFVRNCGGPGNSSAGSAVLTPQRN-- 466
S R + + +S G + H PP L F+R+ P N S ++ P
Sbjct: 47 SRRGSQGTTSSSNNTGGTPSPHSSSLPTSPPQLQGFLRSFLNPDNLSTPTSFGVPSETAL 106
Query: 467 --DHLCA-CFGENICMH 508
D +CA C +C+H
Sbjct: 107 DADKMCAVCNDRAVCLH 123
>AY204167-1|AAO39171.1| 619|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 619
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Frame = +2
Query: 293 SHRCERPSRTSL*GVSGGSTRHHGQWQEPPPNLIRFVRNCGGPGNSSAGSAVLTPQRN-- 466
S R + + +S G + H PP L F+R+ P N S ++ P
Sbjct: 203 SRRGSQGTTSSSNNTGGTPSPHSSSLPTSPPQLQGFLRSFLNPDNLSTPTSFGVPSETAL 262
Query: 467 --DHLCA-CFGENICMH 508
D +CA C +C+H
Sbjct: 263 DADKMCAVCNDRAVCLH 279
>AF273770-1|AAG15119.1| 469|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 469
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Frame = +2
Query: 293 SHRCERPSRTSL*GVSGGSTRHHGQWQEPPPNLIRFVRNCGGPGNSSAGSAVLTPQRN-- 466
S R + + +S G + H PP L F+R+ P N S ++ P
Sbjct: 53 SRRGSQGTTSSSNNTGGTPSPHSSSLPTSPPQLQGFLRSFLNPDNLSTPTSFGVPSETAL 112
Query: 467 --DHLCA-CFGENICMH 508
D +CA C +C+H
Sbjct: 113 DADKMCAVCNDRAVCLH 129
>AF083224-1|AAD03682.1| 619|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 619
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Frame = +2
Query: 293 SHRCERPSRTSL*GVSGGSTRHHGQWQEPPPNLIRFVRNCGGPGNSSAGSAVLTPQRN-- 466
S R + + +S G + H PP L F+R+ P N S ++ P
Sbjct: 203 SRRGSQGTTSSSNNTGGTPSPHSSSLPTSPPQLQGFLRSFLNPDNLSTPTSFGVPSETAL 262
Query: 467 --DHLCA-CFGENICMH 508
D +CA C +C+H
Sbjct: 263 DADKMCAVCNDRAVCLH 279
>AL031635-1|CAA21039.2| 487|Caenorhabditis elegans Hypothetical
protein Y47D3B.1 protein.
Length = 487
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 415 WAWKQLR-RFSRVDSTTQRPSVRLFWREHLHASVDGR 522
WA K + F R D T++ + FWR+ +VDGR
Sbjct: 2 WAMKNIGDTFLRKDINTRQIILGSFWRDEREQNVDGR 38
>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
guidance protein 2,isoform a protein.
Length = 2886
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/75 (21%), Positives = 30/75 (40%)
Frame = +2
Query: 470 HLCACFGENICMHLLMDANFANPHAPRHPQSGLGSDARR*PDGTSCSSCTLISTPSHPAF 649
H+ F + + +N ++PH P L + T+ +S + +TP+H
Sbjct: 718 HISVSFPNTVTSASSILSNSSSPHQPTPSLCSLPESSSLHSIPTAMTSLSTTTTPTHSQG 777
Query: 650 ADREGVXVGGESSLT 694
A +GG + T
Sbjct: 778 APSTSTPIGGSGNST 792
>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
Length = 2914
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/75 (21%), Positives = 30/75 (40%)
Frame = +2
Query: 470 HLCACFGENICMHLLMDANFANPHAPRHPQSGLGSDARR*PDGTSCSSCTLISTPSHPAF 649
H+ F + + +N ++PH P L + T+ +S + +TP+H
Sbjct: 718 HISVSFPNTVTSASSILSNSSSPHQPTPSLCSLPESSSLHSIPTAMTSLSTTTTPTHSQG 777
Query: 650 ADREGVXVGGESSLT 694
A +GG + T
Sbjct: 778 APSTSTPIGGSGNST 792
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,275,489
Number of Sequences: 27780
Number of extensions: 478908
Number of successful extensions: 1208
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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