Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_O08
(837 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d... 33 0.31
At4g27300.1 68417.m03917 S-locus protein kinase, putative simila... 30 2.2
At1g28280.1 68414.m03471 VQ motif-containing protein contains PF... 29 2.9
At1g19835.1 68414.m02487 expressed protein contains Pfam PF05911... 29 2.9
At3g47770.1 68416.m05204 ABC transporter family protein AbcA, Di... 29 5.1
At3g24560.3 68416.m03086 expressed protein contains Pfam profil... 29 5.1
At3g24560.2 68416.m03084 expressed protein contains Pfam profil... 29 5.1
At3g24560.1 68416.m03085 expressed protein contains Pfam profil... 29 5.1
At2g32460.1 68415.m03965 myb family transcription factor (MYB101... 28 6.7
At1g32810.1 68414.m04044 expressed protein 28 6.7
At5g39400.1 68418.m04773 pollen specific phosphatase, putative /... 28 8.8
At5g18260.1 68418.m02146 expressed protein 28 8.8
At5g15340.1 68418.m01796 pentatricopeptide (PPR) repeat-containi... 28 8.8
At4g04545.1 68417.m00665 Ulp1 protease family protein contains P... 28 8.8
>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam
domain PF04931: DNA polymerase V
Length = 1306
Score = 32.7 bits (71), Expect = 0.31
Identities = 23/78 (29%), Positives = 37/78 (47%)
Frame = +1
Query: 169 SDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGL 348
+ D+ R L+ ++K G P +P A + + ++PS A+ L + F L
Sbjct: 71 ASDKQRRLEAALKKNNGVGASRPKPIPVAVNSNSDEADDESLPSAAASSSSLPLNYFTDL 130
Query: 349 DSSPWSVARAAAKSDKIR 402
SS SV AAA+S +R
Sbjct: 131 ASSDASVREAAAESLVLR 148
>At4g27300.1 68417.m03917 S-locus protein kinase, putative similar
to receptor protein kinase [Ipomoea trifida]
gi|836954|gb|AAC23542; contains S-locus glycoprotein
family domain, Pfam:PF00954
Length = 815
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -1
Query: 561 LCGCRGACGF-AKFASINRCMQMFSPKQAHRWSLRCG 454
+CG CG +K C+Q F PK +W++ G
Sbjct: 297 ICGAYAVCGINSKNTPSCSCLQGFKPKSGRKWNISRG 333
>At1g28280.1 68414.m03471 VQ motif-containing protein contains
PF05678: VQ motif
Length = 247
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 181 IGHPRCFQAQNRAGISESDELSKSPTS 101
I PRC + N G+S S E +K PT+
Sbjct: 14 IPSPRCHNSNNSCGMSSSSESNKPPTT 40
>At1g19835.1 68414.m02487 expressed protein contains Pfam PF05911:
Plant protein of unknown function (DUF869)
Length = 982
Score = 29.5 bits (63), Expect = 2.9
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 12/93 (12%)
Frame = -3
Query: 307 LAPMGSLSRRPELRRDNMPWAHPPVALATVRLLS------------GFGHRAFSIGHPRC 164
++PM +S+ E DNM H L T RLL+ + + C
Sbjct: 330 MSPMSHMSQVSEFSLDNMQKFHKENDLLTERLLAMEEETKMLKEALAKRNSELQVSRNLC 389
Query: 163 FQAQNRAGISESDELSKSPTSVGV*EVPLRCYS 65
+ NR E+ +SKSPT G E+P +S
Sbjct: 390 AKTANRLQTLEAQMMSKSPTKRGF-EMPAEIFS 421
>At3g47770.1 68416.m05204 ABC transporter family protein AbcA,
Dictyostelium discoideum, U66526
Length = 900
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 503 CRCSRQNKRTDGRCVVESTRLNLRSCFQA 417
CRC+ +K DG+C ++S L S QA
Sbjct: 66 CRCADDDKNGDGKCEIKSCGLQYSSQNQA 94
>At3g24560.3 68416.m03086 expressed protein contains Pfam profile
PF01171: PP-loop family
Length = 456
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +1
Query: 4 WVSIFEASGCVTLEHSISS---ALNNISRAPLKPQQRLEILRAH 126
W+ + E S C T HSISS AL ++ P ++ L +L H
Sbjct: 375 WLYLAELSKCSTSNHSISSSQKALRSLKLIPAAARKSLPVLVNH 418
>At3g24560.2 68416.m03084 expressed protein contains Pfam profile
PF01171: PP-loop family
Length = 660
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +1
Query: 4 WVSIFEASGCVTLEHSISS---ALNNISRAPLKPQQRLEILRAH 126
W+ + E S C T HSISS AL ++ P ++ L +L H
Sbjct: 579 WLYLAELSKCSTSNHSISSSQKALRSLKLIPAAARKSLPVLVNH 622
>At3g24560.1 68416.m03085 expressed protein contains Pfam profile
PF01171: PP-loop family
Length = 462
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +1
Query: 4 WVSIFEASGCVTLEHSISS---ALNNISRAPLKPQQRLEILRAH 126
W+ + E S C T HSISS AL ++ P ++ L +L H
Sbjct: 381 WLYLAELSKCSTSNHSISSSQKALRSLKLIPAAARKSLPVLVNH 424
>At2g32460.1 68415.m03965 myb family transcription factor (MYB101)
identical to putative transcription factor MYB101
GI:18087348 from [Arabidopsis thaliana]
Length = 490
Score = 28.3 bits (60), Expect = 6.7
Identities = 21/82 (25%), Positives = 37/82 (45%)
Frame = +1
Query: 343 GLDSSPWSVARAAAKSDKIRKKLRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGR 522
GL PW+ A ++ +RK W +++ S + + S RL W HL +
Sbjct: 17 GLKKGPWTTTEDAILTEYVRKHGEGNWNAVQKNSGLLRCGK--SCRLRWANHLRPN---- 70
Query: 523 ELRESTRTPTSTKWIRERCAQI 588
L++ + TP K I + A++
Sbjct: 71 -LKKGSFTPDEEKIIIDLHAKL 91
>At1g32810.1 68414.m04044 expressed protein
Length = 654
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +1
Query: 721 DDGSHPTTVSQNTRXPDSTTQQDCXFRGES 810
DD T ++N R PD TQQD RG S
Sbjct: 373 DDDRCSTRSAKNRRSPDRRTQQDSGSRGGS 402
>At5g39400.1 68418.m04773 pollen specific phosphatase, putative /
phosphatase and tensin, putative (PTEN1) identical to
phosphatase and tensin homolog [Arabidopsis thaliana]
GI:21535746
Length = 412
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 73 ISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRML 192
+SR P+K + LE R H++ F L N+ + R L
Sbjct: 5 LSRGPVKEKSPLEFTRVHILTYFTTNSYLRNLVSKKRRRL 44
>At5g18260.1 68418.m02146 expressed protein
Length = 320
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -2
Query: 815 PWLSPRKXQSCCVVE-SGXRVFCDTVVGCEPSSP 717
PW +P QS + S RVFC+ V CE P
Sbjct: 92 PWETPTNNQSSSLTHCSYPRVFCNPVSVCENPEP 125
>At5g15340.1 68418.m01796 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 623
Score = 27.9 bits (59), Expect = 8.8
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = -2
Query: 455 ESTRLNLRSCFQAHRSFLRILSDLAAALATDHGDESSPPKRLT 327
+ RL LR C AHRSFLR +L A L T G + +P L+
Sbjct: 7 QKVRLLLRHC--AHRSFLRPGKELHAVLTTS-GLKKAPRSYLS 46
>At4g04545.1 68417.m00665 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 882
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 493 EHLHASVDGRELRESTRTPTSTKWIRERCAQITGRDFVQFVHTHINALP 639
E + V G+ R+ + S K + E C+ R F Q HTH+ + P
Sbjct: 389 ESIREVVSGQN-RQKAQKGESNKCVAESCSTKEHRSFDQPGHTHVGSQP 436
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,320,736
Number of Sequences: 28952
Number of extensions: 455875
Number of successful extensions: 1153
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1931371200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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