Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_O06
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   204   1e-53
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   204   2e-53
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    28   1.5  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    28   1.5  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    27   2.6  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    27   3.4  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    27   3.4  
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    26   7.9  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  204 bits (498), Expect = 1e-53
 Identities = 89/116 (76%), Positives = 105/116 (90%)
 Frame = +2

Query: 50  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 229
           F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65

Query: 230 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 397
           K++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKN
Sbjct: 66  KMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKN 121



 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 24/60 (40%), Positives = 41/60 (68%)
 Frame = +2

Query: 602 KSIEKDFKKMIRYCSVVRVIAHTQMKLLNSDXRRLTLWKSNXNGGTIEDKVKWAXXNLEK 781
           +SI ++ +++ +YCSVVRV+AHTQ++      ++  L +   NGG++ DKV+WA  + EK
Sbjct: 142 QSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEK 201


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  204 bits (497), Expect = 2e-53
 Identities = 88/116 (75%), Positives = 105/116 (90%)
 Frame = +2

Query: 50  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 229
           F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65

Query: 230 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 397
           K++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKN
Sbjct: 66  KMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKN 121



 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 24/60 (40%), Positives = 41/60 (68%)
 Frame = +2

Query: 602 KSIEKDFKKMIRYCSVVRVIAHTQMKLLNSDXRRLTLWKSNXNGGTIEDKVKWAXXNLEK 781
           +SI ++ +++ +YCSVVRV+AHTQ++      ++  L +   NGG++ DKV+WA  + EK
Sbjct: 142 QSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEK 201


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = -2

Query: 500 PSSLIVERRLLGNYMHKVTYSRHINKALIFREESSFCRSDVDSLQT 363
           P++ +   ++LGNY+  +T+   ++ A  F  E  +C+  +  + T
Sbjct: 580 PTTSVQPSQILGNYVTGITFMNKVDYATYFSAE-EYCKQGIHMIPT 624


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
 Frame = +2

Query: 8   ILVCDCLPACRTENFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDP-SKPVHLTAFIGYK 184
           IL  +  P C      H  + S   +P     +  G  K FP D+P S P+  +   G  
Sbjct: 284 ILPLELSPGCPFYKIWHIRNTSCQSWPSPLYVKFNGGDKLFPGDNPYSFPITSSVHPGED 343

Query: 185 AGMTHVVREPDRPGSKI 235
              T  ++ P++   +I
Sbjct: 344 VNFTVALKVPEKSNKEI 360


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -3

Query: 211 FSNHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESH-RPMXGVLKIF 44
           F N VG  G+I D S  +   +R+VF    D     +G L  ++SH +P   V  IF
Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTFIF 400


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +2

Query: 38  RTENFQHPXH--GSMGFYPKKRSRRHRGKVKAFPKDDPSKPV 157
           ++E  QHP     +M FY + +     G    FP++   KP+
Sbjct: 186 KSEQVQHPQAVLDAMAFYSQSKKYLEEGAKPPFPRESTEKPL 227


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 702 GSHYGNPTLTVVPSRTK*NGPXKIWRNY 785
           GSH+ N  L  +PS TK N   +I +N+
Sbjct: 327 GSHFNNSVLLQLPSITKNNHKLEILQNF 354


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 469 LVTICTK*HTLGILIKLSSFERRAVFVEATSTVFRHMLRPDS 344
           ++T+C    T  + + LSS E    FV +T + F   + P S
Sbjct: 328 VITLCILLFTHSLALLLSSLEMVLAFVGSTGSTFISFILPGS 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,559,627
Number of Sequences: 5004
Number of extensions: 72499
Number of successful extensions: 160
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)