Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_O03
         (846 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1794 - 29580767-29584189                                         37   0.018
03_06_0520 - 34487664-34488274,34488785-34488974,34489585-344910...    31   0.87 
10_01_0079 - 1027655-1027863,1028416-1028619,1028858-1029485           31   1.5  
08_02_1027 + 23749400-23750698                                         30   2.7  
03_05_0793 + 27755704-27756386,27756473-27757274,27757379-277576...    29   4.7  
06_01_0626 + 4549661-4550947                                           28   8.1  
05_03_0212 + 10260690-10261272,10261921-10262435,10262446-102625...    28   8.1  
03_03_0029 - 13900912-13901457,13901574-13901709,13901961-139021...    28   8.1  

>07_03_1794 - 29580767-29584189
          Length = 1140

 Score = 37.1 bits (82), Expect = 0.018
 Identities = 29/115 (25%), Positives = 59/115 (51%), Gaps = 1/115 (0%)
 Frame = +3

Query: 198 LPMSSSYDLFKTYPEFNEISNQISQNVAQQSNELIGTEQPAVKLKCEDFTSNIEKLADVN 377
           L +   Y+  + + E N  S  + Q +A++ +EL+      ++LK    ++ I++L + N
Sbjct: 260 LELQPIYEKIEKFFELN--SESVVQEMAERVDELVDKVMN-LELKFPKQSAQIKQLKEDN 316

Query: 378 DSLLDRINISIDTVSGENLPSEAFAS-GLNDNPSHNSSPWNKPVISEKKMGSTIF 539
           DSL DR++   D ++  + PS+      L ++  +      + VI E+ + ST+F
Sbjct: 317 DSLKDRLDDLQDEIALRDDPSDLSEQLKLAEDELNRVKALERSVIEEEVLVSTVF 371


>03_06_0520 -
           34487664-34488274,34488785-34488974,34489585-34491045,
           34491149-34491163
          Length = 758

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
 Frame = +3

Query: 288 SNELIGTEQPAV-KLKCE-DFTSN-IEKLADVNDSLLDRIN-ISID-TVSGENLPSEAFA 452
           S  L+GT+   V ++K E   TSN ++ L    DS LD+ N +  D T S +   S    
Sbjct: 225 SQNLLGTKDINVPRIKGERHLTSNAVDSLLKRQDSSLDQYNTVDTDNTGSSQKCVSSEVN 284

Query: 453 SGLNDNPSHNSSPW 494
           S  ++  S NSSPW
Sbjct: 285 SRKSNRSSSNSSPW 298


>10_01_0079 - 1027655-1027863,1028416-1028619,1028858-1029485
          Length = 346

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
 Frame = -3

Query: 721 NSIWYGCSYPTASPFSVYKMF------KAKGLMLFGLSEILGT--HKFSELSIVSLKVSC 566
           N++WY  ++P A+P  V  M       + +   ++GL   L +  H  SE  IV   V+C
Sbjct: 51  NTVWYDAAFPAAAPPPVLDMIGPHILTRIESRSMYGLISFLQSRYHHLSEHEIVQCLVAC 110

Query: 565 GRGMFLA 545
              + LA
Sbjct: 111 RGDLPLA 117


>08_02_1027 + 23749400-23750698
          Length = 432

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 678 KGEAVGYEHPYQMELDMYNPPVAVHRXRSGASMFPPLWRKRNS 806
           KG  V Y+H      D+ NP  A+H+ R+    F  + +KRNS
Sbjct: 388 KGNEVYYDHERTQLEDIRNP--ALHKKRTVLRKFADIMKKRNS 428


>03_05_0793 +
           27755704-27756386,27756473-27757274,27757379-27757634,
           27758355-27758566,27760494-27760709
          Length = 722

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
 Frame = -3

Query: 721 NSIWYGCSYPTASPFSVYKMFKAKGLMLFGLSEILGTHKFSELSIVSL-KVSCGRGMFLA 545
           N++WY   +P    +S   M  ++ L+      +LG   +      ++ +    R + LA
Sbjct: 308 NTVWYDTMFPAEEEYSEVAMICSRTLVSTACRSLLGLVAYLRACFPTVSRQQAIRYLLLA 367

Query: 544 PMNIVDPIFFSEMTGLFQGDEL*EGLSLRPLANAS 440
            +N+   I  +   G    D+   G+  +  A A+
Sbjct: 368 EVNLQRAIEMAGQEGHAMKDKFDRGIGFKAAATAA 402


>06_01_0626 + 4549661-4550947
          Length = 428

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 480 NSSPWNKPVISEKKMGSTIFIGAKNIPRPQLTFKDTID 593
           +S+PW     +EK+  +T+ IG   +P P + F+ + +
Sbjct: 57  DSTPWAGADNNEKEAAATLKIGTIQLPTPIMNFRSSAE 94


>05_03_0212 +
           10260690-10261272,10261921-10262435,10262446-10262569,
           10262840-10263042,10263169-10263240,10264905-10265007,
           10265350-10265582
          Length = 610

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = +1

Query: 670 IPRRAKLLDMSIHTKWSWTC--ITLRSQFIDXDPEPPCFPPSGGN 798
           +PR+  L D +     SWT    TL   F D  P     PP+G N
Sbjct: 296 VPRKIVLQDPTSGAGESWTISVFTLEGDFADIFPPDEDLPPTGPN 340


>03_03_0029 -
           13900912-13901457,13901574-13901709,13901961-13902179,
           13902429-13902801,13903215-13903458
          Length = 505

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = -2

Query: 638 VWFV*NFGHPQILRIINCILESKLWTRNVFSSDEYS*SHLLF 513
           +W+   +   Q+    +C++ES  WT  +F  ++YS + ++F
Sbjct: 206 LWWRQLYDSVQLSYARDCLVESYFWTCAMFHGEDYSRARIIF 247


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,683,314
Number of Sequences: 37544
Number of extensions: 415734
Number of successful extensions: 1057
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)