Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_O03
         (846 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54854| Best HMM Match : LepA_C (HMM E-Value=5.1)                    54   1e-07
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)              35   0.095
SB_21492| Best HMM Match : Ion_trans (HMM E-Value=1.3e-05)             30   2.7  
SB_42042| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_41058| Best HMM Match : FAT (HMM E-Value=0.0082)                    29   4.7  
SB_26607| Best HMM Match : K_tetra (HMM E-Value=3.3e-08)               28   8.3  
SB_52435| Best HMM Match : RYDR_ITPR (HMM E-Value=1.4)                 28   8.3  
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)                 28   8.3  
SB_25622| Best HMM Match : Phage_Treg (HMM E-Value=2.1)                28   8.3  

>SB_54854| Best HMM Match : LepA_C (HMM E-Value=5.1)
          Length = 372

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
 Frame = +3

Query: 396 INISIDTVSGENLPSEAFASGLNDNPSHNSSPWNKPVI-SEKKMGSTIFIGAKNIPRPQL 572
           ++ S+D  SG +   +   S          S WN+    +  K G+   + AKNI RPQ+
Sbjct: 223 LDTSLDEASGLSKNRKPILSPAVRQGGPMVSSWNRKTRDNNNKDGNFRLLLAKNIQRPQM 282

Query: 573 TFKDTIDNSENLWVPKISDKPNNIKPL 653
            FKD IDNS   ++P I  KPN +KPL
Sbjct: 283 KFKDKIDNSNTPFIPIIKYKPNALKPL 309


>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
          Length = 2506

 Score = 34.7 bits (76), Expect = 0.095
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
 Frame = +3

Query: 393  RINISIDTVSGENLPSEAFASGLNDNPSHNSSPWNKPVISEKKMGSTIFIGAKNIPRPQL 572
            R+  S++  S  +L S       N  P HNS   +   + + K  S   + A  +  P+L
Sbjct: 2044 RVISSVEKTSKTSLKSSINIMVSNKGPKHNSEMSSTTSVEKTKSQSKRSLEATKVS-PEL 2102

Query: 573  TFKDTIDNSENLWVPKIS-DKPNNIKPLALNILYT 674
            +F+ T D+ +NL    +S  K  + KP + +I+ T
Sbjct: 2103 SFETTKDSKQNLSKVSLSRGKAESPKPSSSDIVNT 2137


>SB_21492| Best HMM Match : Ion_trans (HMM E-Value=1.3e-05)
          Length = 1130

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +1

Query: 679 RAKLLDMSIHTKWSWTCITLRSQFIDXDPEPPCFPPSGGNEIHFI 813
           R +L+D + HT  ++  +  RS+  D + E P F P G  ++H I
Sbjct: 335 REQLMDAAAHTNKAYLAVR-RSRDPDTETETPRFVPGGSLDLHGI 378


>SB_42042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 863

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 9/134 (6%)
 Frame = +3

Query: 129 HTXAAVTQEGYRSVNKTIKSSNQLPMSSSYDLFKTYPEFNEISNQISQNVAQQSNELIGT 308
           ++  AV + GY  V  T  +    P      LF  YP+   +S  ISQ      N+ +  
Sbjct: 418 YSKLAVPETGYNDVYVTHATD---PQDFWLMLFHNYPKLEALSEDISQTEDIHINDELVE 474

Query: 309 EQPAV---KLKCEDFTSNIEKL---ADVNDSLLDRINISIDTVSGENLPSEAFASGLN-- 464
           E  A+    L     T  ++       V +S   R N  + T S  N P     S  N  
Sbjct: 475 EGFALFNPPLSPPPVTQKLDACVPNTKVTESTPSRYNTPLPTPSRYNTPWST-PSRYNTP 533

Query: 465 -DNPSHNSSPWNKP 503
              PS  ++PW+ P
Sbjct: 534 WSTPSRYNTPWSTP 547


>SB_41058| Best HMM Match : FAT (HMM E-Value=0.0082)
          Length = 628

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 29/101 (28%), Positives = 44/101 (43%)
 Frame = +3

Query: 144 VTQEGYRSVNKTIKSSNQLPMSSSYDLFKTYPEFNEISNQISQNVAQQSNELIGTEQPAV 323
           V+ E  RS+   +    QL     Y LF T  + NE+ N+  +      N+ I  E P +
Sbjct: 427 VSLESARSIYPNMVRLQQLTELQQYTLFFTSCDTNELVNKWKERFPLPDNDFIFVE-PVL 485

Query: 324 KLKCEDFTSNIEKLADVNDSLLDRINISIDTVSGENLPSEA 446
            L+    T+ +  LA VN      +  SI  V   +L S+A
Sbjct: 486 ALR----TAALHMLARVNSRQGREVLGSIYQVLVGHLESQA 522


>SB_26607| Best HMM Match : K_tetra (HMM E-Value=3.3e-08)
          Length = 412

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = -3

Query: 523 IFFSEMTGLFQGDEL*EGLSLRPLANASLGKFSPLTVSMLILILS 389
           +FF +  G F G E   G+ +R   ++  GKF     SMLI+ILS
Sbjct: 148 LFFYQSKGTFCGFETLIGVDVRNPGDSRTGKFL-ARFSMLIIILS 191


>SB_52435| Best HMM Match : RYDR_ITPR (HMM E-Value=1.4)
          Length = 954

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 22/83 (26%), Positives = 37/83 (44%)
 Frame = +3

Query: 261 QISQNVAQQSNELIGTEQPAVKLKCEDFTSNIEKLADVNDSLLDRINISIDTVSGENLPS 440
           ++   +++  N+ +G+E         DF  NI  + +V DSLL      +D  S   L  
Sbjct: 668 ELQSALSEMDNQRVGSELRKENCDWLDFKFNIRTVRNVLDSLLYNQGTQLDDESLRTLLV 727

Query: 441 EAFASGLNDNPSHNSSPWNKPVI 509
           EA A  +N  P    S   +P++
Sbjct: 728 EAGAI-VNSRPLSADSNSCEPLM 749


>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2749

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/67 (22%), Positives = 28/67 (41%)
 Frame = +3

Query: 321 VKLKCEDFTSNIEKLADVNDSLLDRINISIDTVSGENLPSEAFASGLNDNPSHNSSPWNK 500
           V  +  DFT+  + +A  +       N+S+D       P    +   +   S+NS P + 
Sbjct: 319 VSKQSRDFTNGKQAIASEDSKTSKHSNVSVDNDDDAFAPEPPQSPPPSPPESYNSEPEDS 378

Query: 501 PVISEKK 521
           P++   K
Sbjct: 379 PLVGPSK 385


>SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)
          Length = 953

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 171 NKTIKSSNQLPMSSSYDLFKTYPE 242
           N T++S   L  ++ YD+FKTY E
Sbjct: 7   NSTLRSGETLQDTNRYDVFKTYEE 30


>SB_25622| Best HMM Match : Phage_Treg (HMM E-Value=2.1)
          Length = 329

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 621 ISDKPNNIKPLALNILYTEKGEAVGYEHPYQMELDMYNPPV 743
           I D+P+ IK + L +LY+E       ++   M L  Y PPV
Sbjct: 261 IRDRPSAIKQVPLPLLYSETRAITKAKYEDLMSLLAYIPPV 301


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,630,824
Number of Sequences: 59808
Number of extensions: 489636
Number of successful extensions: 1512
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1512
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)