Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_O03
(846 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g35910.1 68418.m04312 3'-5' exonuclease domain-containing pro... 31 1.3
At1g73300.1 68414.m08482 serine carboxypeptidase S10 family prot... 31 1.3
At5g36180.1 68418.m04361 serine carboxypeptidase S10 family prot... 30 1.7
At1g73280.1 68414.m08480 serine carboxypeptidase S10 family prot... 29 2.9
At4g13610.1 68417.m02118 DNA (cytosine-5-)-methyltransferase, pu... 29 3.9
At1g34120.3 68414.m04233 inositol polyphosphate 5-phosphatase I ... 29 3.9
At1g34120.2 68414.m04232 inositol polyphosphate 5-phosphatase I ... 29 3.9
At1g34120.1 68414.m04231 inositol polyphosphate 5-phosphatase I ... 29 3.9
At3g14350.3 68416.m01816 leucine-rich repeat transmembrane prote... 29 5.1
At3g14350.2 68416.m01814 leucine-rich repeat transmembrane prote... 29 5.1
At3g14350.1 68416.m01815 leucine-rich repeat transmembrane prote... 29 5.1
At1g15150.1 68414.m01811 MATE efflux family protein similar to r... 29 5.1
At1g13800.1 68414.m01620 pentatricopeptide (PPR) repeat-containi... 29 5.1
At1g15180.1 68414.m01815 MATE efflux family protein contains Pfa... 28 9.0
>At5g35910.1 68418.m04312 3'-5' exonuclease domain-containing
protein / helicase and RNase D C-terminal
domain-containing protein / HRDC domain-containing
protein low similarity to SP|Q01780
Polymyositis/scleroderma autoantigen 2 {Homo sapiens};
contains Pfam profiles PF00570: HRDC domain, PF01612:
3'-5' exonuclease
Length = 838
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Frame = +3
Query: 165 SVNKTIKSSNQLPMSSSYDLFKTYPEFNEISNQISQNVAQQSNELIGTEQPAVKLKCEDF 344
++++ SS +P S + + + EF ++I+ +Q + IG + V K F
Sbjct: 32 TLSRLSSSSRLIPTSRDFHFYYNFDEFKRPIDEIT-GTSQSTLATIGDSEQ-VWGKSMKF 89
Query: 345 TSNIEK------LADVNDSLLDRINISID 413
+++ L +VND L++R ++S+D
Sbjct: 90 PGDVDDVYAEDWLCNVNDELIERFDVSVD 118
>At1g73300.1 68414.m08482 serine carboxypeptidase S10 family protein
similar to serine carboxypeptidase I precursor
(SP:P07519) [Hordeum vulgare]; glucose acyltransferase
GB:AAD01263 [Solanum berthaultii]; contains Pfam
profile: PF00450 Serine carboxypeptidase; non-consensus
donor splice site GA at exon 8
Length = 441
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/74 (28%), Positives = 34/74 (45%)
Frame = +3
Query: 96 ALNPDAP*XFIHTXAAVTQEGYRSVNKTIKSSNQLPMSSSYDLFKTYPEFNEISNQISQN 275
A++ ++ F H A ++ E Y S+ KT K + K EFN+ +N+I Q
Sbjct: 224 AIDSNSRIPFAHGMALISDELYESLKKTCKGEYTNVHPRNTQCLKFIEEFNKCTNRILQQ 283
Query: 276 VAQQSNELIGTEQP 317
+ + L TE P
Sbjct: 284 LI--LDPLCETETP 295
>At5g36180.1 68418.m04361 serine carboxypeptidase S10 family protein
similar to serine carboxypeptidase I precursor
(SP:P37890) [Oryza sativa]
Length = 441
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/65 (30%), Positives = 29/65 (44%)
Frame = +3
Query: 123 FIHTXAAVTQEGYRSVNKTIKSSNQLPMSSSYDLFKTYPEFNEISNQISQNVAQQSNELI 302
F H A ++ E Y S+ KT K + K EFN+ +N+I Q + + L
Sbjct: 233 FAHGMALISDELYESLKKTCKGEYTNVHPRNTQCLKFVEEFNKCTNRIFQQLI--LDPLC 290
Query: 303 GTEQP 317
TE P
Sbjct: 291 ETETP 295
>At1g73280.1 68414.m08480 serine carboxypeptidase S10 family protein
similar to serine carboxypeptidase I precursor
(SP:P07519) [Hordeum vulgare]; glucose acyltransferase
GB:AAD01263 [Solanum berthaultii]; contains Pfam
profile: PF00450 Serine carboxypeptidase;
Length = 441
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 123 FIHTXAAVTQEGYRSVNKTIKSSNQLPMSSSYDLFKTYPEFNEISNQISQ 272
F H A ++ E + S+ KT K + + + K EFN+ +N I Q
Sbjct: 233 FAHGMALISDELFESLKKTCKGDYRNVHPRNTECLKFIEEFNKCTNSICQ 282
>At4g13610.1 68417.m02118 DNA (cytosine-5-)-methyltransferase,
putative similar to cytosine-5 methyltransferase (METII)
[Arabidopsis thaliana] GI:6523846; contains Pfam
profiles PF01426: BAH domain, PF00145: C-5
cytosine-specific DNA methylase
Length = 1404
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +3
Query: 471 PSHNSSPWNKPVISEKKMGSTIFIGAKNIPR-PQLTFKDTI 590
PS +PW +P++ ++G++I KN R +L++ D I
Sbjct: 377 PSEQYAPWFEPILKTVRIGTSILALLKNETRMAKLSYTDVI 417
>At1g34120.3 68414.m04233 inositol polyphosphate 5-phosphatase I
(IP5PI) nearly identical to inositol polyphosphate
5-phosphatase I [Arabidopsis thaliana] GI:10444261
Length = 589
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +3
Query: 243 FNEISNQISQNVAQQSNELIGTEQPAVKLKCEDFTSNIEKLADVNDS 383
F E S+ ++ N+L E V + ED +NI+ L ND+
Sbjct: 209 FVETSHDACDGISSMDNKLNSVESTDVPIVSEDSLTNIDVLGSTNDN 255
>At1g34120.2 68414.m04232 inositol polyphosphate 5-phosphatase I
(IP5PI) nearly identical to inositol polyphosphate
5-phosphatase I [Arabidopsis thaliana] GI:10444261
Length = 590
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +3
Query: 243 FNEISNQISQNVAQQSNELIGTEQPAVKLKCEDFTSNIEKLADVNDS 383
F E S+ ++ N+L E V + ED +NI+ L ND+
Sbjct: 209 FVETSHDACDGISSMDNKLNSVESTDVPIVSEDSLTNIDVLGSTNDN 255
>At1g34120.1 68414.m04231 inositol polyphosphate 5-phosphatase I
(IP5PI) nearly identical to inositol polyphosphate
5-phosphatase I [Arabidopsis thaliana] GI:10444261
Length = 586
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +3
Query: 243 FNEISNQISQNVAQQSNELIGTEQPAVKLKCEDFTSNIEKLADVNDS 383
F E S+ ++ N+L E V + ED +NI+ L ND+
Sbjct: 205 FVETSHDACDGISSMDNKLNSVESTDVPIVSEDSLTNIDVLGSTNDN 251
>At3g14350.3 68416.m01816 leucine-rich repeat transmembrane protein
kinase, putative similar to leucine-rich repeat
transmembrane protein kinase 1 GB:AAC27894 from [Zea
mays]
Length = 689
Score = 28.7 bits (61), Expect = 5.1
Identities = 19/86 (22%), Positives = 36/86 (41%)
Frame = +3
Query: 405 SIDTVSGENLPSEAFASGLNDNPSHNSSPWNKPVISEKKMGSTIFIGAKNIPRPQLTFKD 584
S D +N ++ ND N S N P++ KK+ +++ + + P P K
Sbjct: 322 STDIEKTDNNINQPIILASNDFHQENKSVQNPPLVETKKLDTSLSMNLR--PPPSERHKS 379
Query: 585 TIDNSENLWVPKISDKPNNIKPLALN 662
D+ + P ++ K + P +N
Sbjct: 380 FDDDDSTMRKPIVAKKAAVVVPSNVN 405
>At3g14350.2 68416.m01814 leucine-rich repeat transmembrane protein
kinase, putative similar to leucine-rich repeat
transmembrane protein kinase 1 GB:AAC27894 from [Zea
mays]
Length = 680
Score = 28.7 bits (61), Expect = 5.1
Identities = 19/86 (22%), Positives = 36/86 (41%)
Frame = +3
Query: 405 SIDTVSGENLPSEAFASGLNDNPSHNSSPWNKPVISEKKMGSTIFIGAKNIPRPQLTFKD 584
S D +N ++ ND N S N P++ KK+ +++ + + P P K
Sbjct: 285 STDIEKTDNNINQPIILASNDFHQENKSVQNPPLVETKKLDTSLSMNLR--PPPSERHKS 342
Query: 585 TIDNSENLWVPKISDKPNNIKPLALN 662
D+ + P ++ K + P +N
Sbjct: 343 FDDDDSTMRKPIVAKKAAVVVPSNVN 368
>At3g14350.1 68416.m01815 leucine-rich repeat transmembrane protein
kinase, putative similar to leucine-rich repeat
transmembrane protein kinase 1 GB:AAC27894 from [Zea
mays]
Length = 717
Score = 28.7 bits (61), Expect = 5.1
Identities = 19/86 (22%), Positives = 36/86 (41%)
Frame = +3
Query: 405 SIDTVSGENLPSEAFASGLNDNPSHNSSPWNKPVISEKKMGSTIFIGAKNIPRPQLTFKD 584
S D +N ++ ND N S N P++ KK+ +++ + + P P K
Sbjct: 322 STDIEKTDNNINQPIILASNDFHQENKSVQNPPLVETKKLDTSLSMNLR--PPPSERHKS 379
Query: 585 TIDNSENLWVPKISDKPNNIKPLALN 662
D+ + P ++ K + P +N
Sbjct: 380 FDDDDSTMRKPIVAKKAAVVVPSNVN 405
>At1g15150.1 68414.m01811 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile PF01554:
Uncharacterized membrane protein family
Length = 487
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = -3
Query: 457 PLANASLGKFSPLTVSMLILILSNKLSFTSASFSMLLVKSSHFSFTAGCSVPISS 293
P+A + +F +SM+++ +LS SASF++ + FSF G S + +
Sbjct: 41 PMAAVVIIQFMIQIISMVMVGHLGRLSLASASFAVSFCNVTGFSFIIGLSCALDT 95
>At1g13800.1 68414.m01620 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 883
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 207 SSSYDLFKTYPEFNEISNQISQNVAQQSNELIGTEQPAVKL 329
S +YDLFK + E N +++ NVA + +G + A++L
Sbjct: 378 SEAYDLFKEFRETNISLDRVCYNVAFDALGKLGKVEEAIEL 418
>At1g15180.1 68414.m01815 MATE efflux family protein contains Pfam
profile PF01554: Uncharacterized membrane protein family
Length = 482
Score = 27.9 bits (59), Expect = 9.0
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Frame = -3
Query: 571 SCGRGMFLAPMNIVDPIFFSEMT-GLFQGDEL*EGLSLRPLANASLGKFSPLTVSMLILI 395
S + L P+ V+ + + ++ GLF + P+A + +F +SM+++
Sbjct: 6 STSKTSLLLPVERVENVTWRDLRDGLFTAELKRLICFAAPMAAVVIAQFMLQIISMVMVG 65
Query: 394 LSNKLSFTSASFSMLLVKSSHFSFTAGCSVPISS 293
LS SAS + + FSF G S + +
Sbjct: 66 HLGNLSLASASLASSFCNVTGFSFIVGLSCALDT 99
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,829,204
Number of Sequences: 28952
Number of extensions: 344266
Number of successful extensions: 1011
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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