Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_O01
         (849 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02590.1 68417.m00353 basic helix-loop-helix (bHLH) family pr...    30   2.2  
At2g30900.1 68415.m03766 expressed protein                             29   5.2  
At3g55220.1 68416.m06133 splicing factor, putative contains CPSF...    28   6.8  
At3g55200.1 68416.m06131 splicing factor, putative contains CPSF...    28   6.8  
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc...    28   9.0  

>At4g02590.1 68417.m00353 basic helix-loop-helix (bHLH) family
           protein similar to A. thaliana putative protein
           F6I18.110, GenBank accession number 2980768
          Length = 310

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -1

Query: 222 LGLTNVSMSQMQGQVDYDFGVGGGSPDRTLRGASRS*GTVM 100
           LGL N S S   G    D G+GGG+P   L+  S   G+ M
Sbjct: 24  LGLPNFSASSAAGLSGVDGGLGGGAPPMMLQLGSGEEGSHM 64


>At2g30900.1 68415.m03766 expressed protein
          Length = 367

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 181 G*LRFWSRGGESRSYVARSESIMRDSDVAFSHSAALAIAQV 59
           G  R WS+ G   S +  ++ IM  S +A  H+A + +A+V
Sbjct: 266 GRAREWSKQGGKGSCIGETKPIMGSSYLAGPHAAEMVVAKV 306


>At3g55220.1 68416.m06133 splicing factor, putative contains CPSF A
           subunit region (PF03178); contains weak WD-40 repeat
           (PF00400); similar to Splicing factor 3B subunit 3
           (SF3b130)/spliceosomal protein/Splicing factor 3B
           subunit 3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
           EMBL:HSAJ1443_1
          Length = 1214

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 400 GRGERSPRRWLQPRLAVPRQASTSVPRTPA 311
           GRG RS  R L+P LA+   A + +P  P+
Sbjct: 426 GRGPRSSLRILRPGLAITEMAVSQLPGQPS 455


>At3g55200.1 68416.m06131 splicing factor, putative contains CPSF A
           subunit region (PF03178); contains weak WD-40 repeat
           (PF00400); similar to Splicing factor 3B subunit 3
           (SF3b130)/spliceosomal protein/Splicing factor 3B
           subunit 3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
           EMBL:HSAJ1443_1
          Length = 1214

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 400 GRGERSPRRWLQPRLAVPRQASTSVPRTPA 311
           GRG RS  R L+P LA+   A + +P  P+
Sbjct: 426 GRGPRSSLRILRPGLAITEMAVSQLPGQPS 455


>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein weak similarity to
           CARS-Cyp [Homo sapiens]  GI:1117968; contains Pfam
           profile PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type
          Length = 837

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 35/106 (33%), Positives = 47/106 (44%), Gaps = 6/106 (5%)
 Frame = -3

Query: 388 RSPRRWLQPRLAVPRQASTSVPRTPAKCCSPTPLRS-NSVVCRSNSFEDLPVFARWTRTH 212
           RSP + +  R  V  +    + R+P+K  S +PLRS   V+ RS      PV  R  R+ 
Sbjct: 445 RSPTKSVS-RSPVRVKKERDISRSPSKSLSRSPLRSPKRVISRS------PVRGRIARSP 497

Query: 211 EC*HVSNA-----GSG*LRFWSRGGESRSYVARSESIMRDSDVAFS 89
               V +A     G G LR  SR   SRS V  S   +  S +  S
Sbjct: 498 SRSPVRSASRGSLGRGPLRRSSRRSPSRSPVRSSRRSLSRSPIQLS 543


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,230,407
Number of Sequences: 28952
Number of extensions: 350197
Number of successful extensions: 1066
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)