Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_N24
         (899 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q24310 Cluster: Polyprotein; n=1; Drosophila melanogast...    44   0.004
UniRef50_A6S269 Cluster: Putative uncharacterized protein; n=2; ...    35   3.3  
UniRef50_Q41DP0 Cluster: Putative uncharacterized protein precur...    34   4.3  
UniRef50_Q3WIG7 Cluster: Phage integrase; n=2; Frankia sp. EAN1p...    34   4.3  
UniRef50_Q07YH4 Cluster: Poly(Beta-D-mannuronate) lyase precurso...    34   5.7  
UniRef50_Q4YVL7 Cluster: Putative uncharacterized protein; n=5; ...    33   7.5  
UniRef50_Q7M3S9 Cluster: RING finger protein B; n=2; Dictyosteli...    33   9.9  

>UniRef50_Q24310 Cluster: Polyprotein; n=1; Drosophila
           melanogaster|Rep: Polyprotein - Drosophila melanogaster
           (Fruit fly)
          Length = 1053

 Score = 44.4 bits (100), Expect = 0.004
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
 Frame = +1

Query: 307 NTSSGTPQERECSIRKSCNNVS--VTSMEDLSHEEIVTSYVLAHVAQFDCRRHHMAFTNG 480
           N  +  P   EC    +   V+   T   ++  EEI  + VLAH+A  D R   + FT+ 
Sbjct: 111 NLLNSRPTAAECYAVYASRLVTQLTTKWRNMEIEEIAVTTVLAHMANIDSRLQRVLFTSN 170

Query: 481 NTTRNKLLQEIKKSQVKLRSHNRSNN 558
             TR+KL  E+K      + H R +N
Sbjct: 171 VRTRSKLQAELKAFTFDKKRHARDDN 196


>UniRef50_A6S269 Cluster: Putative uncharacterized protein; n=2;
           Sclerotiniaceae|Rep: Putative uncharacterized protein -
           Botryotinia fuckeliana B05.10
          Length = 1289

 Score = 34.7 bits (76), Expect = 3.3
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 177 LVFNKIMSTLKLTSEVRSGLYSHWRDVFEHVRS 275
           + FN ++  +K+  E+   L +HWRDV  H+++
Sbjct: 388 VTFNNLVDKIKVAGEITEMLITHWRDVVRHMKN 420


>UniRef50_Q41DP0 Cluster: Putative uncharacterized protein
           precursor; n=1; Exiguobacterium sibiricum 255-15|Rep:
           Putative uncharacterized protein precursor -
           Exiguobacterium sibiricum 255-15
          Length = 359

 Score = 34.3 bits (75), Expect = 4.3
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
 Frame = +1

Query: 364 NVSVTSMEDLS----HEEIVTSYVLAHVAQFDCRRHHMAFTNGNTT-RNKLLQEIKKSQV 528
           N+SV+S +++S    H E++  YV+ ++   D  +  +  +NG TT R K L+     Q 
Sbjct: 196 NLSVSSQDEISLLGIHNEVIVYYVMENINGTDVSKEKLYMSNGKTTKRLKGLKSFSNGQT 255

Query: 529 KL 534
           +L
Sbjct: 256 EL 257


>UniRef50_Q3WIG7 Cluster: Phage integrase; n=2; Frankia sp.
           EAN1pec|Rep: Phage integrase - Frankia sp. EAN1pec
          Length = 572

 Score = 34.3 bits (75), Expect = 4.3
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +1

Query: 247 GVTCLNMFEVQQKKKHYADQNTSSGTPQERECSIRKSCNNVSVT 378
           G+TC+   E  + ++  A Q  ++ +P+E EC  R SC N++ T
Sbjct: 472 GITCVYRAETAECRRILASQGLAADSPRESEC--RSSCTNLAFT 513


>UniRef50_Q07YH4 Cluster: Poly(Beta-D-mannuronate) lyase precursor;
           n=6; Alteromonadales|Rep: Poly(Beta-D-mannuronate) lyase
           precursor - Shewanella frigidimarina (strain NCIMB 400)
          Length = 763

 Score = 33.9 bits (74), Expect = 5.7
 Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
 Frame = +1

Query: 463 MAFTNGNTTRNKLLQEIKKSQVKLRSHNRSNNGSVMTSG*FPTRDRF*ANDYWLELYGHX 642
           + F NG+T  N+++   +KS+ +L +H+R     +     +   DR   +DYW+ LYG  
Sbjct: 112 LVFKNGSTPSNEVIA-FRKSKTQLANHSRVTEVVIDN---YSNLDRQ-ESDYWVSLYGQN 166

Query: 643 VQVNQDLXTGEL---VAENFKIXSDSIPNNXTRXD 738
            +++ +   G+    V    ++ S++   N  R D
Sbjct: 167 NRLDHNHFVGKRNVGVTVAVRLDSENSQQNHHRID 201


>UniRef50_Q4YVL7 Cluster: Putative uncharacterized protein; n=5;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 327

 Score = 33.5 bits (73), Expect = 7.5
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +1

Query: 346 IRKSCNNVSVTSMEDLSHEEIVTSYVLAHVAQFDCRRHHMAFTNGNTTRNKLLQ 507
           I ++ N  S+  ++     E + +YV  H   FDC   ++     N T+NK++Q
Sbjct: 171 IIENINKYSIDQIDKFEEIEHIITYVYFHNIHFDCMTENLVTFLENHTKNKIIQ 224


>UniRef50_Q7M3S9 Cluster: RING finger protein B; n=2; Dictyostelium
           discoideum|Rep: RING finger protein B - Dictyostelium
           discoideum (Slime mold)
          Length = 943

 Score = 33.1 bits (72), Expect = 9.9
 Identities = 21/86 (24%), Positives = 37/86 (43%)
 Frame = +1

Query: 307 NTSSGTPQERECSIRKSCNNVSVTSMEDLSHEEIVTSYVLAHVAQFDCRRHHMAFTNGNT 486
           ++SSG       SI  S ++ S  S   LS   + +SY  +   QF+  ++     N N 
Sbjct: 360 SSSSGGGISGHPSILSSSSSSSYLSTSPLSTSSLASSYQSSQSLQFNQNQNQNNNNNNNN 419

Query: 487 TRNKLLQEIKKSQVKLRSHNRSNNGS 564
             N  +Q    +     ++N +NN +
Sbjct: 420 NNNNNIQTTTTTTTNNNNNNNNNNNN 445


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 755,858,275
Number of Sequences: 1657284
Number of extensions: 13715789
Number of successful extensions: 31797
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 30720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31785
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 81571813589
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)