BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BmNP01_FL5_N24 (899 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 29 0.90 SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa... 27 4.8 SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 26 8.4 SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 8.4 SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 26 8.4 >SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces pombe|chr 3|||Manual Length = 2812 Score = 29.1 bits (62), Expect = 0.90 Identities = 14/43 (32%), Positives = 21/43 (48%) Frame = +1 Query: 280 QKKKHYADQNTSSGTPQERECSIRKSCNNVSVTSMEDLSHEEI 408 +K+K Y Q SG + SIRK+C N+ + L H + Sbjct: 1716 KKQKEYVTQLILSGLLNKNTNSIRKTCMNILLYLRRQLGHHAL 1758 >SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1029 Score = 26.6 bits (56), Expect = 4.8 Identities = 16/42 (38%), Positives = 23/42 (54%) Frame = +1 Query: 361 NNVSVTSMEDLSHEEIVTSYVLAHVAQFDCRRHHMAFTNGNT 486 +N+SVT+ L + +V++Y L CR AFTNG T Sbjct: 853 SNISVTNENRLQYIHLVSNYYLNARLSRQCR----AFTNGFT 890 >SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 607 Score = 25.8 bits (54), Expect = 8.4 Identities = 19/54 (35%), Positives = 26/54 (48%) Frame = +2 Query: 407 SSHLTFWLMLPSLTVDVITWRLLTEIQHVTSYCKKLRNLK*NFDRIIDRIMDLS 568 S LTF +P T +V+T +T V S K L N NF+ + R D+S Sbjct: 193 SGKLTFKANIPVPTSEVVTENNVTRNVTVYSNQKHLGNESENFNDMEGRAEDIS 246 >SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 425 Score = 25.8 bits (54), Expect = 8.4 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Frame = +1 Query: 199 LPSSLHQK*DQDSTLTGVTCLNMF-EVQQKKKHYADQNTSSGTPQERECSIRKSCNNVSV 375 LP L + ++ T +C F EVQ++K+ D+ G ++ S+R+ + + Sbjct: 27 LPPDLLKDITEEDVGTDDSCNKKFLEVQKQKEDEEDEEILKGVDLTQQDSVREKIHEIQ- 85 Query: 376 TSMEDLSHE 402 SM LS + Sbjct: 86 -SMSQLSEK 93 >SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1274 Score = 25.8 bits (54), Expect = 8.4 Identities = 12/41 (29%), Positives = 24/41 (58%) Frame = +1 Query: 265 MFEVQQKKKHYADQNTSSGTPQERECSIRKSCNNVSVTSME 387 +F+ Q+++ HY D TSS T ++ E + +V +++E Sbjct: 918 VFDSQKQRVHYGDMYTSSHTLEKGEYLYKFQLLSVDPSTLE 958 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,129,262 Number of Sequences: 5004 Number of extensions: 59789 Number of successful extensions: 126 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 121 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 126 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 454497130 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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