SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_N24
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    29   0.90 
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    27   4.8  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    26   8.4  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   8.4  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    26   8.4  

>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 280  QKKKHYADQNTSSGTPQERECSIRKSCNNVSVTSMEDLSHEEI 408
            +K+K Y  Q   SG   +   SIRK+C N+ +     L H  +
Sbjct: 1716 KKQKEYVTQLILSGLLNKNTNSIRKTCMNILLYLRRQLGHHAL 1758


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +1

Query: 361 NNVSVTSMEDLSHEEIVTSYVLAHVAQFDCRRHHMAFTNGNT 486
           +N+SVT+   L +  +V++Y L       CR    AFTNG T
Sbjct: 853 SNISVTNENRLQYIHLVSNYYLNARLSRQCR----AFTNGFT 890


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +2

Query: 407 SSHLTFWLMLPSLTVDVITWRLLTEIQHVTSYCKKLRNLK*NFDRIIDRIMDLS 568
           S  LTF   +P  T +V+T   +T    V S  K L N   NF+ +  R  D+S
Sbjct: 193 SGKLTFKANIPVPTSEVVTENNVTRNVTVYSNQKHLGNESENFNDMEGRAEDIS 246


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +1

Query: 199 LPSSLHQK*DQDSTLTGVTCLNMF-EVQQKKKHYADQNTSSGTPQERECSIRKSCNNVSV 375
           LP  L +   ++   T  +C   F EVQ++K+   D+    G    ++ S+R+  + +  
Sbjct: 27  LPPDLLKDITEEDVGTDDSCNKKFLEVQKQKEDEEDEEILKGVDLTQQDSVREKIHEIQ- 85

Query: 376 TSMEDLSHE 402
            SM  LS +
Sbjct: 86  -SMSQLSEK 93


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1274

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +1

Query: 265  MFEVQQKKKHYADQNTSSGTPQERECSIRKSCNNVSVTSME 387
            +F+ Q+++ HY D  TSS T ++ E   +    +V  +++E
Sbjct: 918  VFDSQKQRVHYGDMYTSSHTLEKGEYLYKFQLLSVDPSTLE 958


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,129,262
Number of Sequences: 5004
Number of extensions: 59789
Number of successful extensions: 126
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -