Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_N24
         (899 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0042 - 12731228-12731362,12731984-12732046,12732136-127322...    31   0.94 
09_04_0512 + 18226981-18227143,18227648-18229555,18229649-182302...    30   2.2  
04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879     30   2.9  
10_08_0364 + 17217631-17217833,17218134-17218308,17218391-172184...    29   6.7  
01_05_0078 + 17931998-17932062,17933320-17933416,17933506-179336...    28   8.8  

>07_03_0042 -
           12731228-12731362,12731984-12732046,12732136-12732207,
           12732783-12732855,12732937-12733005,12733375-12733439,
           12733677-12734087,12734186-12734230,12734338-12734413,
           12734555-12734629,12735101-12735207,12736573-12736635
          Length = 417

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +3

Query: 165 TSFYLVFNKIMSTLKLTSEVRSGLYSHWRD 254
           TS Y +FNK+ STL   S V SG ++  RD
Sbjct: 164 TSGYTLFNKLRSTLSSASPVLSGAFAKLRD 193


>09_04_0512 +
           18226981-18227143,18227648-18229555,18229649-18230295,
           18230710-18231949,18232085-18232419,18232500-18232577,
           18232872-18232978,18233020-18233062
          Length = 1506

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 655 GLPVXSAHITLASSHWLKNDPVS-GTTHSS*QIHYSIDYAIEVSL 524
           G P+ SAH+ LA +H L  DP S G  H    +  S+   +E+ L
Sbjct: 316 GQPLESAHLDLAEAHPLNEDPSSTGCYHVPCSVGSSLVDGVELGL 360


>04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879
          Length = 696

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 295 YADQNTSSGTPQERECSIRKSCN-NVSVTSMEDLSHEE 405
           + D   SSG+P   E S+ K C+ ++S TS  D  ++E
Sbjct: 523 HEDMQASSGSPDGSEPSVNKICDGSISWTSRNDFEYKE 560


>10_08_0364 +
           17217631-17217833,17218134-17218308,17218391-17218474,
           17218561-17218802,17218883-17219108,17219246-17219325,
           17219408-17219492,17219665-17219796,17219927-17220040,
           17220123-17220170,17220413-17220497,17220722-17220834
          Length = 528

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +1

Query: 277 QQKKKHYADQNTSSGTPQERECSIRKSCNNVSVTSMEDLSHEEIVTSYVLAHVAQFDCRR 456
           Q  +KHY +Q  +    +ER CS+ K   + +V+  E      IV  +          +R
Sbjct: 49  QYIEKHYKEQMKNLQDRKERRCSLEKKLADANVSEEE---QHNIVKQFEKKETEYMRMQR 105

Query: 457 HHMA 468
           H M+
Sbjct: 106 HKMS 109


>01_05_0078 + 17931998-17932062,17933320-17933416,17933506-17933601,
            17933957-17933988,17935143-17935595,17935831-17935975,
            17936058-17936159,17937798-17937890,17939448-17939489,
            17940092-17940202,17940446-17940517,17940596-17940714,
            17940981-17941044,17941133-17942782
          Length = 1046

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 1/94 (1%)
 Frame = +1

Query: 310  TSSGTPQERECSIRKSCNNVSVTSMEDLSHEEIVT-SYVLAHVAQFDCRRHHMAFTNGNT 486
            +   T Q R  +    CNN     ++   H  I   S   +    F+  R H     GN 
Sbjct: 808  SKQATYQGRYLASNNECNNAFEGKIDPPFHTNIDDISRKFSPGTDFEVNRQHFTAPTGNV 867

Query: 487  TRNKLLQEIKKSQVKLRSHNRSNNGSVMTSG*FP 588
               + L++  +     RS +R+ N    T+G  P
Sbjct: 868  YSLQSLRDSDRFYRTQRSEDRNTNSLESTTGDAP 901


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,980,029
Number of Sequences: 37544
Number of extensions: 362038
Number of successful extensions: 739
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)