Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_N24
         (899 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33418| Best HMM Match : IQ (HMM E-Value=1.6)                        29   6.8  
SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21)            28   8.9  
SB_9715| Best HMM Match : F5_F8_type_C (HMM E-Value=2.4e-22)           28   8.9  

>SB_33418| Best HMM Match : IQ (HMM E-Value=1.6)
          Length = 344

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 655 QDLXTGELVAENFKIXSDSIPNNXTR 732
           Q +  GEL+ EN+K+ ++ I N+ TR
Sbjct: 11  QQVEEGELLVENYKLTTEMIENSCTR 36


>SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21)
          Length = 1728

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 277  QQKKKHYADQNTSSGTPQERECSIRKSCNNVSVTSMED 390
            ++KKK +A Q   SG+  E EC   K+CN      +E+
Sbjct: 1554 ERKKKKFA-QVIDSGSEDEFECDYTKACNPKKQEKVEE 1590


>SB_9715| Best HMM Match : F5_F8_type_C (HMM E-Value=2.4e-22)
          Length = 431

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 345 AAFTFLWRTTTSILICIMFFFLLYFEHVQTR 253
           A  TF W   +++L+ ++ F  LYF +++ R
Sbjct: 240 ATGTFFWILVSALLLAMLVFMFLYFCYIRKR 270


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,797,017
Number of Sequences: 59808
Number of extensions: 453159
Number of successful extensions: 982
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2586032617
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)