Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_N24
         (899 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g40060.1 68417.m05672 homeobox-leucine zipper protein 16 (HB-...    31   0.79 
At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel...    31   1.0  
At5g38396.1 68418.m04641 F-box family protein contains F-box dom...    30   1.8  
At5g19850.1 68418.m02358 hydrolase, alpha/beta fold family prote...    28   7.3  
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    28   7.3  
At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein ...    28   7.3  
At1g15610.1 68414.m01876 hypothetical protein                          28   9.7  

>At4g40060.1 68417.m05672 homeobox-leucine zipper protein 16 (HB-16)
           / HD-ZIP transcription factor 16 identical to
           homeodomain leucine-zipper protein ATHB-16 (GP:5668909|)
           {Arabidopsis thaliana}
          Length = 294

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 439 QFDCRRHHMAFTNGNTTRNKLLQEIKKSQVKLRSHNRSNNGSVMTSG 579
           Q+D  RH+  F +     + LLQEI K + K+     +NN   +T G
Sbjct: 126 QYDSLRHN--FDSLRRDNDSLLQEISKIKAKVNGEEDNNNNKAITEG 170


>At4g02660.1 68417.m00361 WD-40 repeat family protein /
           beige-related contains Pfam PF00400: WD domain, G-beta
           repeat; similar to BEIGE (GI:3928547) [Rattus
           norvegicus]; lysosomal trafficking regulator - Bos
           taurus, EMBL: AF114785
          Length = 3471

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 19/79 (24%), Positives = 36/79 (45%)
 Frame = +1

Query: 232 DSTLTGVTCLNMFEVQQKKKHYADQNTSSGTPQERECSIRKSCNNVSVTSMEDLSHEEIV 411
           D  L   T  +  +++   K Y ++  SS + QE+E ++  S N       +  + +++V
Sbjct: 54  DFNLLSPTSRDKLKLELDFKRYWEEFRSSSSEQEKEAALNLSVNTFCRLVKQHANVDQLV 113

Query: 412 TSYVLAHVAQFDCRRHHMA 468
           T  V  H+  F   R  +A
Sbjct: 114 TMLVEPHIFSFVIGRAFVA 132


>At5g38396.1 68418.m04641 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 462

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +1

Query: 397 HEEIVTSYVLAHVAQ-FDCRRHHMAFTNGNTTRNKLLQEIKKSQVKLRSHNRSNNGSVMT 573
           H  +   Y++ H    F C +    +  GN    + + E+   ++KL + + S+N  +M 
Sbjct: 398 HGTMEEMYMITHFLDYFPCLKELKIYIEGNDHAQREVSEVIAEKIKLYNKSSSSNVQLMV 457

Query: 574 SG 579
           SG
Sbjct: 458 SG 459


>At5g19850.1 68418.m02358 hydrolase, alpha/beta fold family protein
           low similarity to hydrolase [Terrabacter sp. DBF63]
           GI:14196240; contains Pfam profile PF00561: hydrolase,
           alpha/beta fold family
          Length = 359

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = -2

Query: 664 SGPGLPVXSAHITLASSHWLKNDPVSGTTHSS*QIHYSID 545
           SGP L +        S HW KN P+ G TH      YSID
Sbjct: 93  SGPALVLVHG-FGANSDHWRKNTPILGKTHRV----YSID 127


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q12019)
            [Saccharomyces cerevisiae]; similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
            sapiens]; contains Prosite PS00017: ATP/GTP-binding site
            motif A (P-loop)
          Length = 5336

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 478  GNTTRNKLLQEIKKSQVKLRSHNRSNNGSVMTSG*FPTRDR 600
            G TT  ++L ++KK ++ + + ++    S    G FP RDR
Sbjct: 1340 GKTTICQILSDVKKKRLHILNCHQYTETSDFLGGFFPVRDR 1380


>At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 455

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 307 NTSSGTPQERECSIRKSCNNVSVTSM 384
           +T S TP+E E S R S NN+  T+M
Sbjct: 336 STKSTTPEEEERSSRSSYNNLITTTM 361


>At1g15610.1 68414.m01876 hypothetical protein
          Length = 234

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
 Frame = -3

Query: 522 RFLNFLQ*LVTCCISVSKRHVMTSTVKLGNMSQNVRCDDF------FVAQIFHRGNRDVI 361
           R  NFL+      I VS  H++T +    + S++  C  +      F  Q+F      ++
Sbjct: 138 RLENFLESFFVSLIVVSLWHILTESSSRQDTSRHFCCIRYVLPNFQFTVQLFMLPGVSLV 197

Query: 360 TRLTYAAFTFLWRTTTSILICIMFFFLLYFEHV 262
           T L  A  T +  +  S+ + I+  F L F  +
Sbjct: 198 TALVAAIVTMI-NSLLSLFLVIIGLFALTFSWI 229


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,265,979
Number of Sequences: 28952
Number of extensions: 304150
Number of successful extensions: 725
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2120147664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)