Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_N23
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    39   0.001
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    30   0.51 
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    28   1.6  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.7  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    27   3.6  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    26   6.3  
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    26   6.3  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   6.3  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   8.3  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   8.3  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    26   8.3  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 24/76 (31%), Positives = 40/76 (52%)
 Frame = +1

Query: 103 DIAKAFDKVWHNGLIYKLYNMGMPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQ 282
           DI   FD + H+ LI  L +     R + +IR  L N  +      T +R ++   G PQ
Sbjct: 370 DIKACFDSIPHDKLIALLSSKIKDQRFIQLIRKAL-NAGYL-----TENRYKYDIVGTPQ 423

Query: 283 GSALSPLLFSLYINDI 330
           GS +SP+L ++Y++ +
Sbjct: 424 GSIVSPILANIYLHQL 439


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
 Frame = +2

Query: 218 RSDIESRERVPGPVTSQPESRKAPPSPRYYSVCISTIYPGLRRPIW-RSSPMTPPSTTRV 394
           ++D+    RVP P  S   + K+PPS       I +  P L+ P   RSS  +P  T   
Sbjct: 184 KTDLGKPARVPSPKKSLSSTIKSPPSRVKLPTSILSKSPPLKVPNKNRSSTFSPLRTPTS 243

Query: 395 GRRRCFIDDFRPQLPP 442
             +   I D     PP
Sbjct: 244 SSKTFVIVDHSTPSPP 259


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 454 FRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNN 570
           F+ W+    P+ S  +L ++G PP + LS  L   ++ N
Sbjct: 260 FQIWKAHNPPSSSKFILEQKGLPPESNLSSELVAAKLKN 298


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 623 PRRSNI*ASPSTVG*HSAPTSRRYAIVPPSS*DVSTR 733
           P  SN  +  ST   H  P+S+R +++PP++ ++ +R
Sbjct: 314 PSGSNQASLRSTSTIHYTPSSKRISVIPPNTSNIGSR 350


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +2

Query: 227 IESRERVPGPVTSQPESRKAPPSPRYYSVCISTIYPGLRRPIWRSSPMTPPS 382
           + +++R   P+   P  R  PP  R  +  I  I PGL      SS  TP S
Sbjct: 413 LNNQQRESAPLL--PRKRGRPPKKRQENAEIRNITPGLTDSSVHSSSATPQS 462


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 684 DVGAECHPTVEGDA*IFDLRGPRYGLVVHRDWANG 580
           DV A C  +++     +DLR PR+ +    DW NG
Sbjct: 336 DVLATC--SIDSSVHCWDLRSPRFPVNSFYDWHNG 368


>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 213 VRQVVSYDEHEPVWHSHV 160
           +R+ V YDE EP+W S +
Sbjct: 436 IRECVRYDEDEPLWISEL 453


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
 Frame = +1

Query: 331 PRSPETHLALFADDTAIYYSCRKKALLHRRL---QTAATTMGQWFRKWRIDINPTKSTAV 501
           P++ +   +LF+D++ +  S    +L          ++  +   F++ +       ST +
Sbjct: 326 PQTQQNESSLFSDNSMVNSSSNSFSLFPNATLPNPPSSELLTTPFQQIKPPSQVFMSTGL 385

Query: 502 LFKRGRPPNTTLSIPLPTRRVNNPAPAVRP 591
           L K+ RP       PLP    + P+  VRP
Sbjct: 386 LSKQHRPRKNINFTPLPPSTPSKPSTFVRP 415


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 271 GVPQGSALSPLLFSLYINDI 330
           G+PQGS LS  L   Y+ D+
Sbjct: 703 GIPQGSILSSFLCHFYMEDL 722


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 49/188 (26%), Positives = 69/188 (36%), Gaps = 8/188 (4%)
 Frame = +2

Query: 176 TGSCSSYETTCR-TVRSDIESRERVPGPVTSQPES-RKAPPSPRYYSVCI-STIYP---- 334
           TG  SS  T    TV     S   +P P TS   +   + P P   + C  ST  P    
Sbjct: 181 TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGS 240

Query: 335 -GLRRPIWRSSPMTPPSTTRVGRRRCFIDDFRPQLPPWDSGSGSGASTLTPRKAQRCSSK 511
             L  PI  + P T  S+T +               P  + S S  +T T       S+ 
Sbjct: 241 SSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTS-CTTSTSIPPTGNSTT 299

Query: 512 GVALRTPR*ASLSRLGASITPPPPFAQSRCTTSPYRGPRRSNI*ASPSTVG*HSAPTSRR 691
            V    P  ++ S    + TPPPP + S   TS    P  S    + +++      T+  
Sbjct: 300 PVTPTVPPTSTSS----TSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPV 355

Query: 692 YAIVPPSS 715
              VPP+S
Sbjct: 356 TPTVPPTS 363


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
 Frame = +1

Query: 502 LFKRGRPPNTTLSIPLPTRRVNNPAPAVRPITMYDQPIP---WAPKVKYLGVTLDSRMTF 672
           L ++ RP   +L+       V+  AP++R     ++  P   W PK K  G     R   
Sbjct: 408 LLEKLRPEMISLNADF-IGNVDRAAPSLRKAEAEEEKPPEEKWVPKAKARGKNSALRRYL 466

Query: 673 RPHIKTVRDR 702
           R H + V D+
Sbjct: 467 RKHARNVVDQ 476


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,793,631
Number of Sequences: 5004
Number of extensions: 86048
Number of successful extensions: 282
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)