Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_N20
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein Smd2|Schizosaccharo...    27   2.5  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    27   2.5  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   2.5  
SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom...    26   5.7  
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    26   7.5  
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    26   7.5  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    25   10.0 

>SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein
           Smd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 115

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
 Frame = +2

Query: 8   ELKKEKSKERNSGSREVMRELSTSDTTFTLNPDTNE-LATKI---EEHTNLLLENTKKM- 172
           EL + +  E ++G   V+++   +     +N   N+ L  ++   + H+N++LEN K+M 
Sbjct: 16  ELARLEEYEFSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMW 75

Query: 173 VELRETLEG--GGAVDGTIRGSRMVPRPD 253
            E + T  G  G A++     S+M  R D
Sbjct: 76  TEKKRTASGKKGKAINKDRFISKMFLRGD 104


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
            subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 154  QQQVCMFLDFSRQFIRVWVQCKCC 83
            Q+QV    D   +F R+W QC+ C
Sbjct: 1020 QRQVAQVNDLEVRFARLWTQCQRC 1043


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1060

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 222  YGAPVWCHALTRKNVAALRRPQRAIAVRAIRG 317
            YG    C  LT +N++A  R Q   AVR + G
Sbjct: 1011 YGPSFICKLLTHENISASHRQQLQSAVRNVLG 1042


>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 341

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 104 DTNELATKIEEHTNLLLENTKKMVELRETLEG-GGAVDGTIRGSRMVPRPD 253
           +T EL    EE     L + +   + + T+ G  GA++GTI G   +P+PD
Sbjct: 22  ETKELMLNNEES----LSDWRNYFDEKLTIPGESGALNGTINGYLTLPQPD 68


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +2

Query: 47  SREVMRELSTSDTTFTLNPDTNELATKIEEHTNLLLENTKKMVELRET 190
           +REV +E+   + T  +  + ++ A KIEE  +   +  KK  +++ET
Sbjct: 211 TREVEKEVPEEEETEEVKNEEDDKAPKIEEVDDESEKKEKKTKKVKET 258


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
 Frame = +2

Query: 26  SKERNS-GSREVMREL--STSDTTFTLNPD-TNELATK---IEEHTNLLLENTKKMVELR 184
           SKE+ +   R+  R++  S +D   +L+ D  +E+A K   I+     L E+TKK+ +LR
Sbjct: 551 SKEKTAVPPRQKSRDIIASVTDVISSLDKDFQDEMAAKQSMIDSAYTQLRESTKKLSDLR 610

Query: 185 ETL 193
           E L
Sbjct: 611 EQL 613


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 158 NTKKMVELRETLEGGGAVDGTIRGSRMVPR 247
           NT ++  LR  +EG GA+  TIR S    R
Sbjct: 216 NTAEINRLRNIIEGCGALVTTIRSSEFSAR 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,276,511
Number of Sequences: 5004
Number of extensions: 41610
Number of successful extensions: 190
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)