Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_N20
(832 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical... 32 0.58
AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical... 32 0.58
AF000263-10|AAM22070.1| 163|Caenorhabditis elegans Hypothetical... 32 0.58
AF000263-9|AAO21391.2| 184|Caenorhabditis elegans Hypothetical ... 32 0.58
AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical ... 32 0.58
AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical ... 32 0.58
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 30 2.3
Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical pr... 29 4.1
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 29 4.1
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 7.1
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 7.1
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 7.1
Z83220-4|CAC42264.1| 617|Caenorhabditis elegans Hypothetical pr... 28 9.4
Z50797-1|CAA90671.1| 206|Caenorhabditis elegans Hypothetical pr... 28 9.4
AF039052-2|AAF98629.1| 400|Caenorhabditis elegans Hypothetical ... 28 9.4
>AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical
protein T08B2.5f protein.
Length = 838
Score = 31.9 bits (69), Expect = 0.58
Identities = 21/45 (46%), Positives = 23/45 (51%)
Frame = +1
Query: 256 ARTSRRCDVRSARSRSGRSEDTALSPSRRRACSPGRHPGTWRRRR 390
AR +RR RS R GRS SPSRRR R + RRRR
Sbjct: 27 AREARRSRSRSRDRRGGRSRSR--SPSRRRTSRDRRDDRSSRRRR 69
>AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical
protein T08B2.5c protein.
Length = 866
Score = 31.9 bits (69), Expect = 0.58
Identities = 21/45 (46%), Positives = 23/45 (51%)
Frame = +1
Query: 256 ARTSRRCDVRSARSRSGRSEDTALSPSRRRACSPGRHPGTWRRRR 390
AR +RR RS R GRS SPSRRR R + RRRR
Sbjct: 55 AREARRSRSRSRDRRGGRSRSR--SPSRRRTSRDRRDDRSSRRRR 97
>AF000263-10|AAM22070.1| 163|Caenorhabditis elegans Hypothetical
protein T08B2.5d protein.
Length = 163
Score = 31.9 bits (69), Expect = 0.58
Identities = 21/45 (46%), Positives = 23/45 (51%)
Frame = +1
Query: 256 ARTSRRCDVRSARSRSGRSEDTALSPSRRRACSPGRHPGTWRRRR 390
AR +RR RS R GRS SPSRRR R + RRRR
Sbjct: 113 AREARRSRSRSRDRRGGRSRSR--SPSRRRTSRDRRDDRSSRRRR 155
>AF000263-9|AAO21391.2| 184|Caenorhabditis elegans Hypothetical
protein T08B2.5e protein.
Length = 184
Score = 31.9 bits (69), Expect = 0.58
Identities = 21/45 (46%), Positives = 23/45 (51%)
Frame = +1
Query: 256 ARTSRRCDVRSARSRSGRSEDTALSPSRRRACSPGRHPGTWRRRR 390
AR +RR RS R GRS SPSRRR R + RRRR
Sbjct: 134 AREARRSRSRSRDRRGGRSRSR--SPSRRRTSRDRRDDRSSRRRR 176
>AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical
protein T08B2.5a protein.
Length = 924
Score = 31.9 bits (69), Expect = 0.58
Identities = 21/45 (46%), Positives = 23/45 (51%)
Frame = +1
Query: 256 ARTSRRCDVRSARSRSGRSEDTALSPSRRRACSPGRHPGTWRRRR 390
AR +RR RS R GRS SPSRRR R + RRRR
Sbjct: 113 AREARRSRSRSRDRRGGRSRSR--SPSRRRTSRDRRDDRSSRRRR 155
>AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical
protein T08B2.5b protein.
Length = 925
Score = 31.9 bits (69), Expect = 0.58
Identities = 21/45 (46%), Positives = 23/45 (51%)
Frame = +1
Query: 256 ARTSRRCDVRSARSRSGRSEDTALSPSRRRACSPGRHPGTWRRRR 390
AR +RR RS R GRS SPSRRR R + RRRR
Sbjct: 114 AREARRSRSRSRDRRGGRSRSR--SPSRRRTSRDRRDDRSSRRRR 156
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/49 (40%), Positives = 23/49 (46%)
Frame = +1
Query: 247 P*PARTSRRCDVRSARSRSGRSEDTALSPSRRRACSPGRHPGTWRRRRS 393
P P R R A R RS + SP+ RR SP + P RRRRS
Sbjct: 422 PAPKRAKSRSKSPPAPRRR-RSPSQSKSPAPRRRRSPSKSPQAPRRRRS 469
>Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical protein
F52G2.2a protein.
Length = 1319
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 521 RQAARPRLQHGPPR-LEPPRSXYSFAGAPFPP 429
+Q+ +PR P L PP S SF GAP PP
Sbjct: 1221 QQSYQPRYNGAPSGPLPPPSSQSSFNGAPAPP 1252
>Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical protein
F52G2.2b protein.
Length = 1129
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 521 RQAARPRLQHGPPR-LEPPRSXYSFAGAPFPP 429
+Q+ +PR P L PP S SF GAP PP
Sbjct: 1031 QQSYQPRYNGAPSGPLPPPSSQSSFNGAPAPP 1062
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 195 KGVVRSMALYGAPVWCHALTRKNVAALRRPQRAIAVRAIRG 317
+ +++ ALYGAP W L+ N+ L R+ A+RA G
Sbjct: 687 QALIKPTALYGAPAWTSLLSDTNLEKLEIAYRS-ALRACVG 726
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = -3
Query: 506 PRLQHGPPRLEPPRSXYSFAGAPFPPRAKLXTPPVIGSERLRLQVPGWRP 357
P + GPP PP G P PP PP+ G PG P
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = -3
Query: 506 PRLQHGPPRLEPPRSXYSFAGAPFPPRAKLXTPPVIGSERLRLQVPGWRP 357
P + GPP PP G P PP PP+ G PG P
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = -3
Query: 506 PRLQHGPPRLEPPRSXYSFAGAPFPPRAKLXTPPVIGSERLRLQVPGWRP 357
P + GPP PP G P PP PP+ G PG P
Sbjct: 303 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 352
>Z83220-4|CAC42264.1| 617|Caenorhabditis elegans Hypothetical
protein C34B7.4 protein.
Length = 617
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/57 (22%), Positives = 30/57 (52%)
Frame = -3
Query: 659 EKVPAKTTMAGQHXRQPEGEASAVAAHPVRENRADRLDGTEAGRRVRQAARPRLQHG 489
++ P+ ++ ++ R+P + + ++ P+ ++ +RLD TE R L+HG
Sbjct: 32 QQTPSSSSSKRKNLRKPSTDDTPSSSEPL--SKKNRLDSTETAEEDNTRRRRTLKHG 86
>Z50797-1|CAA90671.1| 206|Caenorhabditis elegans Hypothetical
protein T22H6.1 protein.
Length = 206
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
Frame = -3
Query: 386 LRLQVPGWRPGEQARRLEGD------SAVSSDRPDRDRAL 285
LRLQV G + GEQ + G +S++ P RDRAL
Sbjct: 77 LRLQVKGLKHGEQITKSSGKCNSKKLDTISAETPLRDRAL 116
>AF039052-2|AAF98629.1| 400|Caenorhabditis elegans Hypothetical
protein T22D1.8 protein.
Length = 400
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Frame = -2
Query: 294 SRAADVAAPRRSCGSGRGT----IREPRIVPSTAPPP-SNVSLSSTI 169
+R+ ++ P SC S R IR+P + +T PPP S+ S+ TI
Sbjct: 289 TRSRSLSIPVYSCRSARYAACMDIRDPSVSTTTVPPPVSSTSIPVTI 335
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,281,226
Number of Sequences: 27780
Number of extensions: 277754
Number of successful extensions: 1275
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1271
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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