Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_N17
(889 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09) 31 1.2
SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3) 29 3.8
SB_35094| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_5404| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_30122| Best HMM Match : YadA (HMM E-Value=2) 29 5.0
SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0) 29 5.0
SB_33995| Best HMM Match : Cadherin (HMM E-Value=3e-39) 29 5.0
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18) 29 5.0
SB_34943| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_33345| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_27417| Best HMM Match : zf-CCHC (HMM E-Value=0.00021) 28 8.8
SB_23207| Best HMM Match : zf-CCHC (HMM E-Value=0.00021) 28 8.8
>SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)
Length = 458
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +3
Query: 414 TSHS*PLLDYC*RHS*RSQCAGHPFILSHYYWRSRPY--ASSHPPLAI 551
T + LL YC R AGHPF+L Y + R Y +S PL I
Sbjct: 91 TKYDIDLLGYCTEQEIRRVVAGHPFLLDGYKFDLRVYVLVTSCDPLRI 138
>SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3)
Length = 474
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = -2
Query: 456 CDVSSSPTKVNCDWYFEARGGRKNDSLKIDKIRVAVAFYDGGDVR**LHSDTVRFGFGAS 277
C + P + W+F + G K DS + + + G V +HS VR G GA+
Sbjct: 275 CVRAHLPNAADQPWFFLSNTGAKIDSNNVQSLLRSFQRSTGVQVSKPIHSTAVRCGSGAT 334
Query: 276 KIE 268
+ E
Sbjct: 335 EEE 337
>SB_35094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 29.5 bits (63), Expect = 3.8
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = +3
Query: 564 TRSSNPRFHTPTTPDLTSISINPLNAVLKGVRAGVKASGCH-----QRLHQRISPPR 719
TR +PR HTP+TP T +A + + H +R+HQRI PR
Sbjct: 70 TRLVHPRLHTPSTPTATHAEYT--HAYKRRAHPRLHTPTTHTPTRARRVHQRIQTPR 124
Score = 29.5 bits (63), Expect = 3.8
Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Frame = +3
Query: 495 SHYYWRSRPYASSHPPLAISATSTRSSNPRFHTPTTPDLTSISINPLNAVLKGVRAGVKA 674
+H Y R R + H P + T R + R TP TP P +A R V
Sbjct: 91 THAYKR-RAHPRLHTPTTHTPTRARRVHQRIQTPRTP-------RPTHAEYTHARR-VHT 141
Query: 675 SGCHQRLHQRISP-PRHWAWLXGVSP 749
H RLH ++P P H + +P
Sbjct: 142 RRVHPRLHTPVTPTPTHAEYTHAYTP 167
>SB_5404| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 29.5 bits (63), Expect = 3.8
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = +3
Query: 564 TRSSNPRFHTPTTPDLTSISINPLNAVLKGVRAGVKASGCH-----QRLHQRISPPR 719
TR +PR HTP+TP T +A + + H +R+HQRI PR
Sbjct: 70 TRLVHPRLHTPSTPTATHAEYT--HAYKRRAHPRLHTPTTHTPTRARRVHQRIQTPR 124
Score = 29.5 bits (63), Expect = 3.8
Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Frame = +3
Query: 495 SHYYWRSRPYASSHPPLAISATSTRSSNPRFHTPTTPDLTSISINPLNAVLKGVRAGVKA 674
+H Y R R + H P + T R + R TP TP P +A R V
Sbjct: 91 THAYKR-RAHPRLHTPTTHTPTRARRVHQRIQTPRTP-------RPTHAEYTHARR-VHT 141
Query: 675 SGCHQRLHQRISP-PRHWAWLXGVSP 749
H RLH ++P P H + +P
Sbjct: 142 RRVHPRLHTPVTPTPTHAEYTHAYTP 167
>SB_30122| Best HMM Match : YadA (HMM E-Value=2)
Length = 408
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 394 SAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSSRIT 504
S P K+P+T T+A+VT +++ +PS + +T
Sbjct: 239 SRPETKVPITTIGASTSAEVTTSQRDLMPSPSQAHVT 275
>SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 1433
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
Frame = +1
Query: 268 FDLTGTETKSNSVTVQS---LPNVSSIIKGYRDAYLVNL 375
F +TG E KS+S+T++ +P V ++ +G D +LV+L
Sbjct: 485 FTITGQEGKSDSITIRHADVIPRV-ALARGNEDVFLVHL 522
>SB_33995| Best HMM Match : Cadherin (HMM E-Value=3e-39)
Length = 632
Score = 29.1 bits (62), Expect = 5.0
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = +3
Query: 507 WR-SRPYASSHPPLAISATSTRSSNPRFHTPTTPDLTSI-SINPLNAVLKGVRAGVKASG 680
WR + P + + I+ T + PRF P P +TSI P + V A + SG
Sbjct: 443 WRPNMPELPAEATVLITVTDINDNAPRFAIPREPLVTSIHQFRPAGTTVTKVTAYDQDSG 502
Query: 681 CH 686
H
Sbjct: 503 SH 504
>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
Length = 796
Score = 29.1 bits (62), Expect = 5.0
Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +3
Query: 513 SRPYASSHPPLAISATSTRSSN-PRFHTPTTPDLTSISINP 632
S P P IS TS SS PR H PTTP T + P
Sbjct: 249 STPRHHGEPQTTISITSIISSAIPRGHLPTTPSTTPQATPP 289
>SB_34943| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 28.3 bits (60), Expect = 8.8
Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
Frame = +3
Query: 480 HPFILSHY-YWRSRPYASSHPPLA-ISATSTRSSNPRFHTPTTPDLTSISINPLNAVLKG 653
HP + + Y + +RP ++ P A + TR P HTP TP T
Sbjct: 26 HPRLHAEYIHAYTRPPSTPRPTHAEYTQAYTRRVRPLLHTPVTPKPTHAEYTHAE-YTHA 84
Query: 654 VRAGVKASGCHQRLHQRISP-PRHWAWLXGVSP 749
H RLH ++P P H + +P
Sbjct: 85 EYTHAYTRRVHPRLHTPVTPTPTHAEYTHAYTP 117
>SB_33345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 728
Score = 28.3 bits (60), Expect = 8.8
Identities = 21/52 (40%), Positives = 27/52 (51%)
Frame = +3
Query: 561 STRSSNPRFHTPTTPDLTSISINPLNAVLKGVRAGVKASGCHQRLHQRISPP 716
+T SSNP + P L S+S PL+A G A +SG R +Q SPP
Sbjct: 320 TTYSSNPSTPVGSPPPLASVSERPLSA---GSGASGHSSG-WGRTNQPTSPP 367
>SB_27417| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
Length = 538
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 522 YASSHPPLAISATSTRSSNPRFHTPTTPDLTSIS 623
Y S PPL++ + ST + +P TP TSIS
Sbjct: 502 YKGSEPPLSVCSFSTLNVDPPTPNSPTPISTSIS 535
>SB_23207| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
Length = 260
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 522 YASSHPPLAISATSTRSSNPRFHTPTTPDLTSIS 623
Y S PPL++ + ST + +P TP TSIS
Sbjct: 224 YKGSEPPLSVCSFSTLNVDPPTPNSPTPISTSIS 257
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,617,933
Number of Sequences: 59808
Number of extensions: 513416
Number of successful extensions: 1547
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1540
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -