Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_N17
         (889 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55020.1 68418.m06853 myb family transcription factor (MYB120...    29   5.4  
At5g50780.1 68418.m06291 ATP-binding region, ATPase-like domain-...    28   7.2  
At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1 (MSH...    28   9.5  

>At5g55020.1 68418.m06853 myb family transcription factor (MYB120)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 523

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
 Frame = +3

Query: 501 YYWRSRPYASSHPPLAISATS----TRSSNPRF-HTPTTPDLTSISINPL 635
           Y+  + PY+SS P  +++ +S    T +S+P F H+  TP  TS   NP+
Sbjct: 336 YHNTNNPYSSS-PSFSLNPSSSSYPTSTSSPSFLHSHYTPSSTSFHTNPV 384


>At5g50780.1 68418.m06291 ATP-binding region, ATPase-like
           domain-containing protein low similarity to microrchidia
           [Homo sapiens] GI:5410257; contains Pfam profile
           PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
           HSP90-like domain protein
          Length = 823

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = +3

Query: 525 ASSHPPLAISATSTRSSNPRFHTPTTPDLTSISINPLNAVLKGVRAGVKAS 677
           ASS      S+  T ++ PRF+TPT     S   NP + V  G +  VK S
Sbjct: 601 ASSRKRTVPSSFKTPTAAPRFNTPTA---ASEKFNPRSNVNGGGKGSVKVS 648


>At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1
           (MSH6-1) (AGAA.3) identical to SP|O04716 DNA mismatch
           repair protein MSH6-1 (AtMsh6-1) cress] {Arabidopsis
           thaliana}
          Length = 1324

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +1

Query: 313 QSLPNVSSIIKGYRDAY 363
           QSLPN+SS IK ++DA+
Sbjct: 854 QSLPNISSSIKYFKDAF 870


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,071,352
Number of Sequences: 28952
Number of extensions: 375324
Number of successful extensions: 1016
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2081245872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)