Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_N16
         (922 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    55   7e-10
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    54   2e-09
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    53   4e-09
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    51   1e-08
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    51   1e-08
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    23   4.4  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    22   7.7  

>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 55.2 bits (127), Expect = 7e-10
 Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 2/126 (1%)
 Frame = +1

Query: 139 ESPPDSKIVVNLTLHLRRANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSS 315
           ES P  ++   LTL  +  ++ E    +   A L + W D  L WN  E+G    L ++ 
Sbjct: 25  ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82

Query: 316 ERLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIXRLDISTPISMQLDXWPNDMHTC 492
            +LW+PDV++ N+A     G +     V +NGS  ++      +   M +  +P D   C
Sbjct: 83  NKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLYVPPGIFKSTCKMDITWFPFDDQHC 142

Query: 493 TFKFGS 510
             KFGS
Sbjct: 143 DMKFGS 148


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 53.6 bits (123), Expect = 2e-09
 Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
 Frame = +1

Query: 139 ESPPDSKIVVNLTLHLRRANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSS 315
           ES P  ++   LTL  +  ++ E    +   A L + W D  L WN  E+ G     ++ 
Sbjct: 25  ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82

Query: 316 ERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIXRLDISTPISMQLDXWPNDMHTC 492
            +LW+PDV++ N+A     G +     V +NGS  ++      +   + +  +P D   C
Sbjct: 83  NKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLYVPPGIFKSTCKIDITWFPFDDQHC 142

Query: 493 TFKFGS 510
             KFGS
Sbjct: 143 DMKFGS 148


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 52.8 bits (121), Expect = 4e-09
 Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 2/126 (1%)
 Frame = +1

Query: 139 ESPPDSKIVVNLTLHLRRANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSS 315
           ES P  ++   LTL  +  ++ E    +   A L + W D  L WN  E+ G     ++ 
Sbjct: 25  ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82

Query: 316 ERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIXRLDISTPISMQLDXWPNDMHTC 492
            +LW+PDV++ N+A     G +     V + GS  ++      +   M +  +P D   C
Sbjct: 83  NKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGSCLYVPPGIFKSTCKMDITWFPFDDQHC 142

Query: 493 TFKFGS 510
             KFGS
Sbjct: 143 DMKFGS 148


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 51.2 bits (117), Expect = 1e-08
 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
 Frame = +1

Query: 238 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 411
           L + W D  L WN  E+G    L ++  +LW+PDV++ N+A     G +     V + GS
Sbjct: 56  LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115

Query: 412 VSWIXRLDISTPISMQLDXWPNDMHTCTFKFGS 510
             ++      +   M +  +P D   C  KFGS
Sbjct: 116 CLYVPPGIFKSTCKMDITWFPFDDQHCDMKFGS 148


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 51.2 bits (117), Expect = 1e-08
 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
 Frame = +1

Query: 238 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 411
           L + W D  L WN  E+G    L ++  +LW+PDV++ N+A     G +     V + GS
Sbjct: 56  LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115

Query: 412 VSWIXRLDISTPISMQLDXWPNDMHTCTFKFGS 510
             ++      +   M +  +P D   C  KFGS
Sbjct: 116 CLYVPPGIFKSTCKMDITWFPFDDQHCDMKFGS 148


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +1

Query: 379 ALRARVSNNGSVSWIXRLDISTPISMQLDXWPND 480
           A+   +  N + SW   ++  + + M LD W ND
Sbjct: 272 AIEGIIFFNLAKSWPQLIEKWSRVEMALDNWKND 305


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -2

Query: 426 LYPG-DGAVIRYTGAESVVPGGGC 358
           LY G DG+VI     E VV G GC
Sbjct: 348 LYLGSDGSVILKNYKEMVVVGCGC 371


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,304
Number of Sequences: 336
Number of extensions: 3130
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25754817
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)