Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_N16
         (922 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029...    33   0.42 
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321...    30   2.3  
07_03_1747 + 29188568-29188715,29188793-29189541                       30   2.3  
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677...    29   5.2  
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305...    29   6.9  
03_02_0111 + 5688649-5688942                                           28   9.1  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    28   9.1  

>05_03_0366 -
           13102147-13102281,13102560-13102739,13102791-13102992,
           13104385-13104575
          Length = 235

 Score = 32.7 bits (71), Expect = 0.42
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -2

Query: 309 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSTSQM-QGQVDYDFGVGG 145
           H P AAA  P VP++    P  L +     GG GL   S S +  G  + D G+GG
Sbjct: 7   HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61


>11_06_0411 -
           23230580-23230795,23231407-23231862,23232142-23232195,
           23232251-23232367
          Length = 280

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +3

Query: 207 VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTL 323
           V+ H  +  R S EL+RQ  ELER+G  L+   G L  +
Sbjct: 89  VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127


>07_03_1747 + 29188568-29188715,29188793-29189541
          Length = 298

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 21/60 (35%), Positives = 29/60 (48%)
 Frame = +2

Query: 362 PPPGTTLSAPVYLITAPSPGXSAWTLALQFLCS*TXGPTTCTLARSSSGLGCPXLTXRYF 541
           PPP TT++  V L TA +   S   +  QF+C+     TTC  + S S    P L   Y+
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESES---LPGLAGLYY 266


>01_07_0188 -
           41866689-41866763,41866889-41867155,41867277-41867722,
           41867945-41868033,41868279-41868368,41868661-41868739,
           41868979-41869042,41869597-41869684,41869776-41869836,
           41869906-41869969,41870134-41870188,41870275-41870346,
           41870469-41870551,41870629-41870724,41871279-41871383,
           41872159-41872227,41872470-41872561,41872667-41872886
          Length = 704

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -2

Query: 336 VRPPQAFRGHQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSTSQMQGQV 169
           ++PP     H   + AP P +P+ S   P++  +   PH        S++QM  Q+
Sbjct: 551 LQPPAHMLPHAQGSRAPLPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQM 606


>08_02_1291 +
           25930056-25930067,25930289-25930334,25930434-25930546,
           25930645-25930930,25931357-25931421,25931642-25931693,
           25931774-25931883,25932611-25932641,25932853-25933004,
           25934622-25934840
          Length = 361

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 222 HGGLGLTNVSTSQMQGQVDYDFGVGGRLPI 133
           +GG  L     +Q  G   Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129


>03_02_0111 + 5688649-5688942
          Length = 97

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +2

Query: 290 AAALGWCPRNACGGLTWYC*TRLQPPPGTTLSAPVYLITAPSPGXSAWT 436
           AAA    P     G  +   +   PPP   L+ P+Y + AP    SA+T
Sbjct: 35  AAAAATGPHRRGRGRCYCSASDAPPPPPYVLTTPLYYVNAPPHMGSAYT 83


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 391 GRGERSPRRWLQPRLAVPRQASTSVPRTP 305
           GRG RS  R L+P LA+   A + +P  P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,960,890
Number of Sequences: 37544
Number of extensions: 458558
Number of successful extensions: 1400
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1394
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)