Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_N14
(833 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 58 9e-09
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 54 1e-07
04_04_0701 + 27373057-27374013 30 2.0
03_02_0641 + 10076105-10076430,10076496-10076667,10076775-100769... 30 2.6
03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551 29 3.5
06_03_1258 + 28796643-28798169 29 4.6
03_02_0726 + 10722759-10722857,10722969-10723058,10723141-107232... 29 4.6
02_05_0624 - 30451032-30451140,30451294-30451409,30451506-304515... 29 4.6
05_05_0221 - 23385626-23386702 29 6.0
11_01_0752 - 6327269-6327764,6328571-6328839 28 8.0
02_05_0448 - 29100674-29100716,29100821-29100902,29101010-291011... 28 8.0
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 58.0 bits (134), Expect = 9e-09
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Frame = +3
Query: 309 CYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLM 488
C + +QI E AS Y ++ AYF D V GFAK F +++ EER+HA KL+ Y M
Sbjct: 91 CEAAISEQINVEFNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNM 150
Query: 489 RG---KLTGSVTDLITYRGPRK 545
RG +L VT L + P K
Sbjct: 151 RGGRVRLQSIVTPLTEFDHPEK 172
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 54.4 bits (125), Expect = 1e-07
Identities = 32/71 (45%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Frame = +3
Query: 342 EVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG---KLTGSV 512
E AS Y ++ AYF D V GFAK F +++ EER+HA KLI Y MRG +L V
Sbjct: 134 EYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRLQSIV 193
Query: 513 TDLITYRGPRK 545
T L + P K
Sbjct: 194 TPLTEFDHPEK 204
>04_04_0701 + 27373057-27374013
Length = 318
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/61 (31%), Positives = 34/61 (55%)
Frame = +1
Query: 376 GLTSRSIR*TAPASRSYSSMLRLKNASTRPSSLTTCS*GES*QAP*PTSSRTGAPANTSW 555
G+ +++++ AP S SS L ++ +R ++ TT S G S + PTS P++ SW
Sbjct: 235 GVANKAVKTEAPTSAYSSSSL---SSMSRDTTATTSSAGTSTGSSEPTSFPVVTPSSWSW 291
Query: 556 E 558
+
Sbjct: 292 D 292
>03_02_0641 +
10076105-10076430,10076496-10076667,10076775-10076962,
10077128-10077286,10077518-10077863
Length = 396
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = -1
Query: 656 SLKLLSQVLMTSRMLLVTSLS-SLRACSRADAPLSHDVFAGAPVRDEVGYGA 504
S ++ +L+ + L ++LS L R DA +S DVF+G+ VRD+ G GA
Sbjct: 17 STSIVFLLLLHAFSLPASALSFGLARRHRKDAAVSCDVFSGSWVRDDGGGGA 68
>03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551
Length = 589
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 562 GASALEHALKLESDVTNSIREVIKTCESSFNDYHLV 669
G LE+ +D+TN+ E I T SS ND+ LV
Sbjct: 381 GCPHLEYWAVHVTDITNAALEAIGTYSSSLNDFRLV 416
>06_03_1258 + 28796643-28798169
Length = 508
Score = 29.1 bits (62), Expect = 4.6
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Frame = +1
Query: 436 LRLKNASTRPSSLTT-----CS*G--ES*QAP*PTSSRTGAPANTSWESGASALEHALKL 594
LR ASTRP S+ CS G + +AP P SS+ A A+ + + L+HAL L
Sbjct: 306 LRRLLASTRPKSVIVVEDVDCSLGLFDRTRAPAPPSSQDDADADADEQRNRAMLQHALTL 365
>03_02_0726 +
10722759-10722857,10722969-10723058,10723141-10723245,
10723597-10723698,10724721-10724805,10725281-10725365,
10725473-10725517,10725685-10728672,10728839-10729055,
10729193-10729765
Length = 1462
Score = 29.1 bits (62), Expect = 4.6
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +2
Query: 476 LPAHEGKADRLRNRPHHV--QGPPQTRRGRAAHQPSSTPS 589
+P KA+ NR H V QG P+TR +A+ STPS
Sbjct: 276 IPGEIRKAEDAVNRIHDVAVQGTPRTRLAMSANTDFSTPS 315
>02_05_0624 -
30451032-30451140,30451294-30451409,30451506-30451580,
30452033-30452093,30452198-30452424
Length = 195
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 369 AMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLL 485
A+ YF + TV P A FF + +RE T L+D LL
Sbjct: 115 ALPKYFQVGTVIEP--ASEFFSSRLTKRERKTTLVDELL 151
>05_05_0221 - 23385626-23386702
Length = 358
Score = 28.7 bits (61), Expect = 6.0
Identities = 28/72 (38%), Positives = 31/72 (43%)
Frame = +2
Query: 344 SGRVNPVLSHGGLLLDRYGEPPRLREAILRCCD*RTRARDQAH*LPAHEGKADRLRNRPH 523
S V L HG L +G L ILRCCD R A +A A AD R +P
Sbjct: 36 SAAVLEALLHGASLPPAHGGAHALAAEILRCCD-RALAALRAG-GDAESSSADTKR-KPA 92
Query: 524 HVQGPPQTRRGR 559
Q P TRR R
Sbjct: 93 TAQ--PSTRRRR 102
>11_01_0752 - 6327269-6327764,6328571-6328839
Length = 254
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 458 RDQAH*LPAHEGKADRLRNRPHHVQGPPQTRRGRA 562
R A LP+ G +R R RP + P RRGRA
Sbjct: 133 RGAARLLPSTRGDRERCRVRPRRPRLPGARRRGRA 167
>02_05_0448 -
29100674-29100716,29100821-29100902,29101010-29101130,
29101481-29101546,29101628-29101735,29102083-29102148,
29102605-29102633,29102773-29102902
Length = 214
Score = 28.3 bits (60), Expect = 8.0
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -1
Query: 290 PLIPDGDGADVTLCSCGRS*GSNESEDSKENSPHLNFSYNHRFFDDTQKN 141
P+I G+ D + C D KE PH RFF+D +KN
Sbjct: 129 PMIDQGEKDDKIIAVCADDPEYRHFRDIKEIPPH-RLQEIRRFFEDYKKN 177
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,449,723
Number of Sequences: 37544
Number of extensions: 402311
Number of successful extensions: 1104
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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