Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_N14
         (833 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    25   0.86 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   3.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   3.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   6.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   6.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   8.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   8.0  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 25.0 bits (52), Expect = 0.86
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 538 PANTSWESGASALEHALKLESDVTNSI 618
           P   SW S  + +  A KL+ ++ NSI
Sbjct: 151 PTEASWHSPEAHISVAQKLQKEIPNSI 177


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -1

Query: 722 GRVGPCTVRRGIPPDK 675
           G+ GPC ++  +P D+
Sbjct: 616 GKAGPCAIKSVVPSDE 631


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -1

Query: 722 GRVGPCTVRRGIPPDK 675
           G+ GPC ++  +P D+
Sbjct: 654 GKAGPCAIKSVVPSDE 669


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -1

Query: 620 RMLLVTSLSSLRACSRADAPLSHDVFAG 537
           R+LL++++  +  CS  +  L  D+F G
Sbjct: 10  RILLISAVFCVGLCSEDEERLVRDLFRG 37


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +3

Query: 36  ANRTYLFEFPANYKSPSAPVCVKA 107
           A RTYLF+   N      P  V A
Sbjct: 545 AGRTYLFDLDYNESEEQCPYTVDA 568


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 548 VFAGAPVRDEVGYGACQLS 492
           VF  AP+   +GY  C LS
Sbjct: 90  VFKIAPIFKGIGYATCVLS 108


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 548 VFAGAPVRDEVGYGACQLS 492
           VF  AP+   +GY  C LS
Sbjct: 143 VFKIAPIFKGIGYATCVLS 161


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,014
Number of Sequences: 438
Number of extensions: 3760
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)