Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_N12
(880 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 201 9e-53
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 201 1e-52
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce... 29 1.2
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 29 1.2
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 29 1.2
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 27 3.5
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 26 6.1
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica... 26 8.1
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 201 bits (491), Expect = 9e-53
Identities = 88/116 (75%), Positives = 104/116 (89%)
Frame = +2
Query: 50 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKADMTHVVREPDRPGS 229
F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKA MTH+VR+ DRPGS
Sbjct: 6 FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65
Query: 230 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 397
K++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKN
Sbjct: 66 KMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKN 121
Score = 94.7 bits (225), Expect = 2e-20
Identities = 40/92 (43%), Positives = 66/92 (71%), Gaps = 1/92 (1%)
Frame = +3
Query: 603 KSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAXXHLEK 782
+SI ++ +++ +YCSVVRV+AHTQ++ QKKAH+MEIQ+NGG++ DKV+WA H EK
Sbjct: 142 QSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEK 201
Query: 783 PIPVDSVLXXMK*LXAL-VSQGQGSKGVXSRW 875
+ + S + + + V++G+G++G +RW
Sbjct: 202 TVDIKSTFEQNEMIDVIGVTRGKGNEGTTARW 233
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 201 bits (490), Expect = 1e-52
Identities = 87/116 (75%), Positives = 104/116 (89%)
Frame = +2
Query: 50 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKADMTHVVREPDRPGS 229
F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKA MTH+VR+ DRPGS
Sbjct: 6 FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65
Query: 230 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 397
K++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKN
Sbjct: 66 KMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKN 121
Score = 94.7 bits (225), Expect = 2e-20
Identities = 40/92 (43%), Positives = 66/92 (71%), Gaps = 1/92 (1%)
Frame = +3
Query: 603 KSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAXXHLEK 782
+SI ++ +++ +YCSVVRV+AHTQ++ QKKAH+MEIQ+NGG++ DKV+WA H EK
Sbjct: 142 QSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEK 201
Query: 783 PIPVDSVLXXMK*LXAL-VSQGQGSKGVXSRW 875
+ + S + + + V++G+G++G +RW
Sbjct: 202 TVDIKSTFEQNEMIDVIGVTRGKGNEGTTARW 233
>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 554
Score = 28.7 bits (61), Expect = 1.2
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -1
Query: 211 FSNHVGHIGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESH-RPMXGVLKIF 44
F N VG +G+I D S + +R+VF D +G L ++SH +P V IF
Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTFIF 400
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/66 (24%), Positives = 34/66 (51%)
Frame = -3
Query: 560 SLLLAFVPD*LNQTPML*EKPSSLIVERRLLGNYTHKVTYSRHINKALIFREESSFCRSD 381
+L+LA + + LN + P++ + ++LGNY +T+ ++ A F E +C+
Sbjct: 562 NLMLAVLKNSLNTYIYM--TPTTSVQPSQILGNYVTGITFMNKVDYATYFSAE-EYCKQG 618
Query: 380 VDSLQT 363
+ + T
Sbjct: 619 IHMIPT 624
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 28.7 bits (61), Expect = 1.2
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +2
Query: 8 ILVCDCLPACRTENFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDP-SKPVHLTAFIGYK 184
IL + P C H + S +P + G K FP D+P S P+ + G
Sbjct: 284 ILPLELSPGCPFYKIWHIRNTSCQSWPSPLYVKFNGGDKLFPGDNPYSFPITSSVHPGED 343
Query: 185 ADMTHVVREPDRPGSKI 235
+ T ++ P++ +I
Sbjct: 344 VNFTVALKVPEKSNKEI 360
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +2
Query: 38 RTENFQHPXH--GSMGFYPKKRSRRHRGKVKAFPKDDPSKPV 157
++E QHP +M FY + + G FP++ KP+
Sbjct: 186 KSEQVQHPQAVLDAMAFYSQSKKYLEEGAKPPFPRESTEKPL 227
>SPBC1683.12 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 642 CSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDK 752
C+VV + T M+ QRQ K I + LNG +++K
Sbjct: 433 CTVVGTLTATAMRFYLQRQNK--IKQEILNGERVDEK 467
>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
modification enzyme|Schizosaccharomyces pombe|chr
2|||Manual
Length = 666
Score = 25.8 bits (54), Expect = 8.1
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -3
Query: 518 PML*EKPSSLIVERRLLGNYTHKVTYSRHINKALIFREESSFCRSDVD 375
P L + P ++ + G YT+ + NK L R+ES+ SD D
Sbjct: 544 PKLKDIPKRVLQRLIIEGKYTYYIKRQGTQNKQLNCRDESTVIPSDFD 591
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,547,981
Number of Sequences: 5004
Number of extensions: 73055
Number of successful extensions: 161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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