Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_N12
         (880 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    28   0.33 
AJ438610-5|CAD27477.1|  135|Anopheles gambiae hypothetical prote...    24   5.3  

>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 28.3 bits (60), Expect = 0.33
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +2

Query: 326 GLRALLTVWAEHMSEDCRRRFYKNC 400
           G+R   ++WAE +  +CR+++ + C
Sbjct: 770 GIRYASSIWAESLKFECRKQWLRRC 794


>AJ438610-5|CAD27477.1|  135|Anopheles gambiae hypothetical protein
           protein.
          Length = 135

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -1

Query: 217 VRFSNHVGHIGLITDKS-SQMNRFARVVFRERLDLTTMTTGPLFGIESHRPMXGVLKIFC 41
           VR     G  G ++ +  +  + F+  + +++ D+T  TT   F    +R    +L IFC
Sbjct: 59  VRVRQLAGCSGYVSPRGGTNSDDFSPYIKQDKKDITFSTTQDNFPTPHNRITIVLLPIFC 118

Query: 40  A 38
           A
Sbjct: 119 A 119


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 894,971
Number of Sequences: 2352
Number of extensions: 18087
Number of successful extensions: 17
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 94266828
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)