Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_N12
         (880 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi...   198   4e-51
At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi...   189   2e-48
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi...   189   2e-48
At4g10750.1 68417.m01755 HpcH/HpaI aldolase family protein simil...    34   0.11 
At1g29195.1 68414.m03572 expressed protein                             31   1.3  
At1g68480.1 68414.m07823 zinc finger (C2H2 type) family protein ...    28   9.5  

>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
           to ribosomal protein GI:806279 from [Arabidopsis
           thaliana]
          Length = 390

 Score =  198 bits (483), Expect = 4e-51
 Identities = 84/116 (72%), Positives = 103/116 (88%)
 Frame = +2

Query: 50  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKADMTHVVREPDRPGS 229
           F+HP HGS+GF P+KR+ RHRGKVKAFPKDDP+KP  LT+F+GYKA MTH+VR+ ++PGS
Sbjct: 6   FEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDVEKPGS 65

Query: 230 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 397
           K++KKE  EAVTIIETPPMV VGVVGY++TP GLR+L TVWA+H+SE+ RRRFYKN
Sbjct: 66  KLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYKN 121



 Score = 92.7 bits (220), Expect = 3e-19
 Identities = 44/99 (44%), Positives = 69/99 (69%), Gaps = 2/99 (2%)
 Frame = +3

Query: 585 QDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQ-RQKKAHIMEIQLNGGTIEDKVKW 761
           + E G+K I+   +KM +YCSV+RV+AHTQ++ +K  +QKKAH+ EIQ+NGG I  KV +
Sbjct: 138 ETEEGKKDIQSQLEKMKKYCSVIRVLAHTQIRKMKGLKQKKAHLNEIQINGGDIAKKVDY 197

Query: 762 AXXHLEKPIPVDSVLXXMK*LXAL-VSQGQGSKGVXSRW 875
           A    EK +PVD++    + +  + V++G+G +GV +RW
Sbjct: 198 ACSLFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGVVTRW 236


>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  189 bits (460), Expect = 2e-48
 Identities = 82/116 (70%), Positives = 99/116 (85%)
 Frame = +2

Query: 50  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKADMTHVVREPDRPGS 229
           F+HP HGS+GF P+KR+ RHRGKVKAFPKDD +KP   TAF+GYKA MTH+VRE ++PGS
Sbjct: 6   FEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVEKPGS 65

Query: 230 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 397
           K++KKE  EAVTIIETP MV VGVV Y++TP GLR+L TVWA+H+SE+ RRRFYKN
Sbjct: 66  KLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYKN 121



 Score = 91.9 bits (218), Expect = 5e-19
 Identities = 44/100 (44%), Positives = 70/100 (70%), Gaps = 2/100 (2%)
 Frame = +3

Query: 582 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQ-RQKKAHIMEIQLNGGTIEDKVK 758
           +  E G+K I+   +KM +Y +V+RV+AHTQ++ +K  +QKKAH+MEIQ+NGGTI  KV 
Sbjct: 137 YDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAHMMEIQINGGTIAQKVD 196

Query: 759 WAXXHLEKPIPVDSVLXXMK*LXAL-VSQGQGSKGVXSRW 875
           +A    EK IP+++V    + +  + V++G+G +GV +RW
Sbjct: 197 FAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRW 236


>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  189 bits (460), Expect = 2e-48
 Identities = 82/116 (70%), Positives = 99/116 (85%)
 Frame = +2

Query: 50  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKADMTHVVREPDRPGS 229
           F+HP HGS+GF P+KR+ RHRGKVKAFPKDD +KP   TAF+GYKA MTH+VRE ++PGS
Sbjct: 6   FEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVEKPGS 65

Query: 230 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 397
           K++KKE  EAVTIIETP MV VGVV Y++TP GLR+L TVWA+H+SE+ RRRFYKN
Sbjct: 66  KLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYKN 121



 Score = 91.9 bits (218), Expect = 5e-19
 Identities = 44/100 (44%), Positives = 70/100 (70%), Gaps = 2/100 (2%)
 Frame = +3

Query: 582 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQ-RQKKAHIMEIQLNGGTIEDKVK 758
           +  E G+K I+   +KM +Y +V+RV+AHTQ++ +K  +QKKAH+MEIQ+NGGTI  KV 
Sbjct: 137 YDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAHMMEIQINGGTIAQKVD 196

Query: 759 WAXXHLEKPIPVDSVLXXMK*LXAL-VSQGQGSKGVXSRW 875
           +A    EK IP+++V    + +  + V++G+G +GV +RW
Sbjct: 197 FAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRW 236


>At4g10750.1 68417.m01755 HpcH/HpaI aldolase family protein similar
           to 2,4-dihydroxydec-2-ene-1,10-dioic acid aldolase
           [Sphingopyxis macrogoltabida] GI:23330203; contains Pfam
           profile PF03328: HpcH/HpaI aldolase family
          Length = 358

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 21/84 (25%), Positives = 38/84 (45%)
 Frame = -1

Query: 424 KLSSFERRAVFVEATSTVFRHMLRPDSQQSA*SMRGLNVSNNTDTNHRRSLDDGDSLHDL 245
           K SS +    F   T T  R+   P     A ++    ++N + T+ +  L  G++L+ L
Sbjct: 36  KFSSIKSSVSFSRKTLTPIRYSSSPADHSPATAVEA--ITNRSKTSLKSRLRGGETLYGL 93

Query: 244 FLVDF*TGTVRFSNHVGHIGLITD 173
           FL+ F       + H G+  ++ D
Sbjct: 94  FLLSFSPTLAEIAAHAGYDYVVVD 117


>At1g29195.1 68414.m03572 expressed protein
          Length = 193

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +2

Query: 161 LTAFIGYKADMTHVVREPDRPGSKINKKEIVEAVTIIETPP 283
           +TA    KA   HV+++P  P S  ++++++ A  I+  PP
Sbjct: 37  ITASEIMKAHPKHVLKKPSSPTSDHDERDVISATKIVIVPP 77


>At1g68480.1 68414.m07823 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 253

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +2

Query: 671 SNEAVKTATKEGSHYGNPT*RWYHRGQSEMGXXTSGETYPCRFC 802
           S +  K A +EGS  G        +G  E G   SG+ Y CRFC
Sbjct: 18  SKDGNKQALEEGSSSGQRK----KKGSKE-GKDESGKVYECRFC 56


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,936,943
Number of Sequences: 28952
Number of extensions: 399460
Number of successful extensions: 909
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2067932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)