Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_N11
(886 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0456 + 29521282-29522064 32 0.70
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 31 1.2
08_02_0600 - 19166283-19166851,19166988-19168839,19169347-191694... 30 2.8
03_04_0006 + 16257288-16259522 30 2.8
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166... 30 2.8
06_03_0854 + 25400855-25403741,25406174-25407708 29 5.0
06_01_0437 + 3101449-3101521,3101872-3102232,3103766-3103958,310... 29 5.0
04_04_1105 - 30942735-30942791,30943116-30943466,30943670-309437... 29 5.0
09_06_0258 + 21900685-21901927,21902571-21902710 29 6.6
06_01_0672 - 4903126-4903219,4903322-4903430,4903620-4905096,490... 29 6.6
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 6.6
>01_06_0456 + 29521282-29522064
Length = 260
Score = 31.9 bits (69), Expect = 0.70
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Frame = -1
Query: 709 AWQC--PRTGSRGSFKRRRAFPPRHHSARLER----NTVRPPILSTA 587
AW+C P +G+RG +RRR P S R R +T+RP + S A
Sbjct: 12 AWRCYSPASGARGGSRRRRRRPAGTTSRRCSRADRLDTLRPYVTSAA 58
>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 313 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLLSL 459
G+ PR + D EW N PT+ ++ + +PRE Q+ K + L
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLKPAIFIL 1441
>08_02_0600 -
19166283-19166851,19166988-19168839,19169347-19169415,
19171797-19171844,19173500-19173622
Length = 886
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +2
Query: 32 PGPAFSGLPRIFLAV-RSCRFRFVRDRHDSVRPPFNG 139
P P ++GLPR F R C+ +D H V PP G
Sbjct: 222 PPPPYTGLPRAFFGQHRGCKVTLYQDAH--VAPPLAG 256
>03_04_0006 + 16257288-16259522
Length = 744
Score = 29.9 bits (64), Expect = 2.8
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = -1
Query: 520 AKRSP---TYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWE 368
A+RSP Y T L + ARL T PA SP +AV S + G W+
Sbjct: 162 ARRSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSGKRVAVASWQGKPGLWD 215
>02_05_0110 +
25914110-25915006,25915726-25915797,25916411-25916699,
25916864-25916949,25917267-25917490,25917674-25917740,
25917830-25917889,25917995-25918078,25918475-25918555
Length = 619
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -1
Query: 337 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTG 236
LDDE YL R V + RLL+F++VD STG
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -1
Query: 520 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 395
AKR+PT T P AR +++ +F +P P P +V+S
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVIS 515
>06_01_0437 +
3101449-3101521,3101872-3102232,3103766-3103958,
3104051-3104848,3104997-3105143,3106024-3106377
Length = 641
Score = 29.1 bits (62), Expect = 5.0
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +3
Query: 606 GRTVFRSKR--AEW*RGGNARRRLKLPRDPVRGHCQAGS*LGA 728
G+T+ R R A W RG A RR +LP G +AG LG+
Sbjct: 36 GQTLTRGPRTCAVWRRGRAAVRRRRLPAASAEGGAKAGRSLGS 78
>04_04_1105 - 30942735-30942791,30943116-30943466,30943670-30943762,
30943869-30944072,30944155-30944399,30945019-30945877,
30946070-30946936,30947113-30947562
Length = 1041
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Frame = -2
Query: 117 ESC-RSRTKRNRHDLTA--RKIRGRPENAGPGSSP 22
ESC R + ++ D+TA K RGR N PG+SP
Sbjct: 906 ESCSRDKARKRSDDVTAMGEKRRGRMHNHEPGASP 940
>09_06_0258 + 21900685-21901927,21902571-21902710
Length = 460
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = -1
Query: 745 FFDRCTAPSQLPAWQCPRTGSRGSFKRRRAFPPRHHSARLERNTVRPPILSTAHRFRPTE 566
+FD C S + + P +G G+ KR FP + ++ V P L A R TE
Sbjct: 396 YFDVCYTQSTIFRYSAPSSGLNGNLKRPGKFPMPYPR---KQQAVNEPFLPDAGRGLETE 452
>06_01_0672 -
4903126-4903219,4903322-4903430,4903620-4905096,
4906200-4906538
Length = 672
Score = 28.7 bits (61), Expect = 6.6
Identities = 30/116 (25%), Positives = 38/116 (32%)
Frame = -1
Query: 736 RCTAPSQLPAWQCPRTGSRGSFKRRRAFPPRHHSARLERNTVRPPILSTAHRFRPTE*VM 557
R T PS A PR S RRRA PP+ R R P + A T
Sbjct: 148 RTTTPSPAGAAASPRLSSSNPDARRRA-PPQPEPPSTPRKENRVPSAAAASTAAATATPR 206
Query: 556 KQ*K*WFFSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLD 389
+ S + S +P +P R P P+PV A + D
Sbjct: 207 LRALSRSRSSLKESASSVRDSPRRAPPPPRRSHDGDAGDRPKQQPEPVHAATTTAD 262
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 6.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2
Query: 642 TTLHAWNETPCARRYY 595
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,618,078
Number of Sequences: 37544
Number of extensions: 544562
Number of successful extensions: 1642
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1640
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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