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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_N11
         (886 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0456 + 29521282-29522064                                         32   0.70 
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890...    31   1.2  
08_02_0600 - 19166283-19166851,19166988-19168839,19169347-191694...    30   2.8  
03_04_0006 + 16257288-16259522                                         30   2.8  
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166...    30   2.8  
06_03_0854 + 25400855-25403741,25406174-25407708                       29   5.0  
06_01_0437 + 3101449-3101521,3101872-3102232,3103766-3103958,310...    29   5.0  
04_04_1105 - 30942735-30942791,30943116-30943466,30943670-309437...    29   5.0  
09_06_0258 + 21900685-21901927,21902571-21902710                       29   6.6  
06_01_0672 - 4903126-4903219,4903322-4903430,4903620-4905096,490...    29   6.6  
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764           29   6.6  

>01_06_0456 + 29521282-29522064
          Length = 260

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
 Frame = -1

Query: 709 AWQC--PRTGSRGSFKRRRAFPPRHHSARLER----NTVRPPILSTA 587
           AW+C  P +G+RG  +RRR  P    S R  R    +T+RP + S A
Sbjct: 12  AWRCYSPASGARGGSRRRRRRPAGTTSRRCSRADRLDTLRPYVTSAA 58


>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
            8905437-8905690,8905785-8908799,8908889-8909001,
            8909975-8910164,8910399-8910512,8910591-8910698,
            8910941-8911073,8911206-8911408,8911626-8911826
          Length = 1889

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 313  GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLLSL 459
            G+  PR +  D  EW N  PT+   ++ + +PRE     Q+ K  +  L
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLKPAIFIL 1441


>08_02_0600 -
           19166283-19166851,19166988-19168839,19169347-19169415,
           19171797-19171844,19173500-19173622
          Length = 886

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +2

Query: 32  PGPAFSGLPRIFLAV-RSCRFRFVRDRHDSVRPPFNG 139
           P P ++GLPR F    R C+    +D H  V PP  G
Sbjct: 222 PPPPYTGLPRAFFGQHRGCKVTLYQDAH--VAPPLAG 256


>03_04_0006 + 16257288-16259522
          Length = 744

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = -1

Query: 520 AKRSP---TYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWE 368
           A+RSP    Y T L +   ARL    T    PA SP    +AV S   + G W+
Sbjct: 162 ARRSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSGKRVAVASWQGKPGLWD 215


>02_05_0110 +
           25914110-25915006,25915726-25915797,25916411-25916699,
           25916864-25916949,25917267-25917490,25917674-25917740,
           25917830-25917889,25917995-25918078,25918475-25918555
          Length = 619

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 337 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTG 236
           LDDE   YL  R  V   +  RLL+F++VD  STG
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313


>06_03_0854 + 25400855-25403741,25406174-25407708
          Length = 1473

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 520 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 395
           AKR+PT  T    P  AR  +++   +F   +P P P +V+S
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVIS 515


>06_01_0437 +
           3101449-3101521,3101872-3102232,3103766-3103958,
           3104051-3104848,3104997-3105143,3106024-3106377
          Length = 641

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 606 GRTVFRSKR--AEW*RGGNARRRLKLPRDPVRGHCQAGS*LGA 728
           G+T+ R  R  A W RG  A RR +LP     G  +AG  LG+
Sbjct: 36  GQTLTRGPRTCAVWRRGRAAVRRRRLPAASAEGGAKAGRSLGS 78


>04_04_1105 - 30942735-30942791,30943116-30943466,30943670-30943762,
            30943869-30944072,30944155-30944399,30945019-30945877,
            30946070-30946936,30947113-30947562
          Length = 1041

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = -2

Query: 117  ESC-RSRTKRNRHDLTA--RKIRGRPENAGPGSSP 22
            ESC R + ++   D+TA   K RGR  N  PG+SP
Sbjct: 906  ESCSRDKARKRSDDVTAMGEKRRGRMHNHEPGASP 940


>09_06_0258 + 21900685-21901927,21902571-21902710
          Length = 460

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = -1

Query: 745 FFDRCTAPSQLPAWQCPRTGSRGSFKRRRAFPPRHHSARLERNTVRPPILSTAHRFRPTE 566
           +FD C   S +  +  P +G  G+ KR   FP  +     ++  V  P L  A R   TE
Sbjct: 396 YFDVCYTQSTIFRYSAPSSGLNGNLKRPGKFPMPYPR---KQQAVNEPFLPDAGRGLETE 452


>06_01_0672 -
           4903126-4903219,4903322-4903430,4903620-4905096,
           4906200-4906538
          Length = 672

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 30/116 (25%), Positives = 38/116 (32%)
 Frame = -1

Query: 736 RCTAPSQLPAWQCPRTGSRGSFKRRRAFPPRHHSARLERNTVRPPILSTAHRFRPTE*VM 557
           R T PS   A   PR  S     RRRA PP+       R   R P  + A     T    
Sbjct: 148 RTTTPSPAGAAASPRLSSSNPDARRRA-PPQPEPPSTPRKENRVPSAAAASTAAATATPR 206

Query: 556 KQ*K*WFFSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLD 389
            +      S  +   S    +P  +P   R          P   P+PV  A  + D
Sbjct: 207 LRALSRSRSSLKESASSVRDSPRRAPPPPRRSHDGDAGDRPKQQPEPVHAATTTAD 262


>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
          Length = 640

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 642 TTLHAWNETPCARRYY 595
           TT  AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,618,078
Number of Sequences: 37544
Number of extensions: 544562
Number of successful extensions: 1642
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1640
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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