Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_N11
(886 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 31 1.0
At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family prot... 29 4.1
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 29 5.4
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 29 5.4
At2g28990.1 68415.m03526 leucine-rich repeat protein kinase, put... 28 7.2
At1g50260.1 68414.m05635 C2 domain-containing protein low simila... 28 7.2
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi... 28 9.5
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ... 28 9.5
At1g60630.1 68414.m06825 leucine-rich repeat family protein simi... 28 9.5
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -3
Query: 629 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCYTSHV 483
LG +H PA +I+R P PP +S +++++F E +CY S V
Sbjct: 231 LGLEHVLPA-VIERIPPPPG-ISESPLRMLLFDSFFNEYKGVICYVSVV 277
>At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family protein
similar to SP|P22418 Fructose-1,6-bisphosphatase,
chloroplast precursor (EC 3.1.3.11)
(D-fructose-1,6-bisphosphate 1-phosphohydrolase)
(FBPase) {Spinacia oleracea}; contains Pfam profile
PF00316: fructose-1,6-bisphosphatase
Length = 404
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -1
Query: 499 ATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLD 389
A+ + SP+N+ L S SS +D P PL +VS D
Sbjct: 105 ASLVASPFNSSLGKLSVNSSSGSDRDAPKPLDIVSND 141
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 28.7 bits (61), Expect = 5.4
Identities = 9/37 (24%), Positives = 22/37 (59%)
Frame = -1
Query: 301 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 191
++T V P ++ F+H I + ++ + V+ + GH+ +
Sbjct: 33 VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 69
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 28.7 bits (61), Expect = 5.4
Identities = 9/37 (24%), Positives = 22/37 (59%)
Frame = -1
Query: 301 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 191
++T V P ++ F+H I + ++ + V+ + GH+ +
Sbjct: 32 VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 68
>At2g28990.1 68415.m03526 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 884
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 59 RIFLAVRSCRFRFVRDRHDSVRPPFNGQLRT 151
R++L+ R+ D HD + PFNG T
Sbjct: 192 RVYLSNSDASIRYADDVHDRIWSPFNGSSHT 222
>At1g50260.1 68414.m05635 C2 domain-containing protein low
similarity to CLB1 [Lycopersicon esculentum] GI:2789434;
contains Pfam profile PF00168: C2 domain
Length = 675
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 37 TRVLRPSADLPSRKVVSVSFRARSARFCTTAVQRSAQN 150
+RVLRPS + + + +S FR S T R A N
Sbjct: 38 SRVLRPSVKISNFRFISCGFRGNSKNLRLTDSSRKAAN 75
>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
like protein A, Arabidopsis thaliana, gb:Q07970
Length = 790
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 593 DRAPLPPNRVSNETMKVVVFQRRSRET 513
+RAPLP V E + + F +R +ET
Sbjct: 7 NRAPLPSPNVKKEALSSIPFDKRRKET 33
>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
F-box family protein
Length = 379
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -3
Query: 644 SPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETIS 507
S LC LG+ R PAD I+ L R+ M +V R S + I+
Sbjct: 54 SILCKLGSTSRCPADFIN-VLLTCKRLKGLAMNPIVLSRLSPKAIA 98
>At1g60630.1 68414.m06825 leucine-rich repeat family protein similar
to receptor kinase GI:498278 from [Petunia
integrifolia]; contains protein kinase domain,
Pfam:PF00069; contains leucine-rich repeats,
Pfam:PF00560
Length = 652
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = -2
Query: 384 DRDSGNLVNPLMRVTN*MTRHLATLRES*LLPPFTRACLNFFTLTFRALGRNHIASTPA 208
+R SG + + L+R++ T ++ S +PP +A L FF ++ L HI T A
Sbjct: 143 NRFSGKIPSSLLRLSRLYTFYVQDNLFSGSIPPLNQATLRFFNVSNNQLS-GHIPPTQA 200
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,959,223
Number of Sequences: 28952
Number of extensions: 398293
Number of successful extensions: 998
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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