Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_N10
(883 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar... 241 9e-65
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar... 50 6e-07
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo... 31 0.16
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 27 3.5
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 26 6.2
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 26 6.2
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ... 26 6.2
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 26 8.2
>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 241 bits (590), Expect = 9e-65
Identities = 114/232 (49%), Positives = 158/232 (68%)
Frame = +3
Query: 102 QTVPPTIPVAELFPDGNFPEGQIMDHGPAEGIDERTAKNRFTSEEKRALDRLHKDIYQEI 281
QT PPT+ ++++F + +P G++ D+ AE RT T EEKRALDR + D Y ++
Sbjct: 65 QTNPPTVGLSKIFVNKKYPVGEVCDY--AEDNLWRT-----TDEEKRALDRQNFDQYNDL 117
Query: 282 RHAAEAHRQTRKHIRNWIKPGMTMIDICEELEKTARRLIGEDGLKAGLAFPTGCSRNHCA 461
R AAE HRQ R++ ++ IKPGM+M+D+ +E T R L+ EDGLK+G+ FPTG S NHCA
Sbjct: 118 RRAAEVHRQARQYAQSVIKPGMSMMDVVNTIENTTRALVEEDGLKSGIGFPTGVSLNHCA 177
Query: 462 AHYTPNTGDTTVLEYDDVVKIDFGTHINGRIIDCAFTLHFNPRYDPLVKGVQXATEAGIK 641
AHYTPN GDTT+L+ DV+K+D G H+NGRI+D AFT+ F+P+YD L+ V+ AT GI+
Sbjct: 178 AHYTPNAGDTTILKEKDVMKVDIGVHVNGRIVDSAFTMSFDPQYDNLLAAVKAATNKGIE 237
Query: 642 ASGVDVRLCDVXAAVQXVMXSHXXEXXGXMYXXKPXRNLNGHXXEPYXIXXG 797
+G+D RL ++ A+Q VM S+ E G + K RNL GH +PY I G
Sbjct: 238 EAGIDARLNEIGEAIQEVMESYEVEINGKTHQVKSIRNLCGHNLDPYIIHGG 289
>SPAC23H4.09 |cdb4||curved DNA-binding protein
Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 49.6 bits (113), Expect = 6e-07
Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
Frame = +3
Query: 225 TSEEKRALDRLHKDIYQEIRHAAEAHRQTRKHIRNWIKPGMTMIDIC----EELEKTARR 392
TSE + + + + A E + K + +PG + DIC E L + ++
Sbjct: 7 TSETAVDYSLSNPETVNKYKIAGEVSQNVIKKVVELCQPGAKIYDICVRGDELLNEAIKK 66
Query: 393 LIGEDGLKAGLAFPTGCSRNHCAAHYTPNTGD---TTVLEYDDVVKIDFGTHING 548
+ G+AFPT S N AAH +P D L+ DVVKI G HI+G
Sbjct: 67 VYRTKDAYKGIAFPTAVSPNDMAAHLSPLKSDPEANLALKSGDVVKILLGAHIDG 121
>SPBC23E6.05 |arx1||ribosomal export complex Arx1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 417
Score = 31.5 bits (68), Expect = 0.16
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Frame = +3
Query: 420 GLAFPTGCSRNHCAAHYTP-------NTGDTTVLEYDDVVKIDFGTHINGRIIDCAFTLH 578
G+A PT N+CA +Y P ++ L+ DV KI G H +G + T+
Sbjct: 72 GIAEPTSICVNNCAYNYAPGPESVIAGNDNSYHLQVGDVTKISMGLHFDGYTALISHTIV 131
Query: 579 FNPRYDP 599
P P
Sbjct: 132 VTPPPQP 138
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 347 HARLDPIADVFSCLPVGFSSMS 282
H LD I DVFSC PV + S
Sbjct: 194 HILLDFILDVFSCSPVNLKAQS 215
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 26.2 bits (55), Expect = 6.2
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +3
Query: 258 HKDIYQEIRHAAEAHRQTRKHIRNWIKPGMTMIDIC 365
+ D+ E+ + E+H +T +H + + P +ID+C
Sbjct: 386 YSDLRFELLYT-ESHSRTLRHEKRHVSPKSPLIDVC 420
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 26.2 bits (55), Expect = 6.2
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Frame = +1
Query: 109 SHLLYQ*RNYFLMETFLRVKLWTMVLL--RVLMRELQKIVLQVRRKELLIDYIKIFIRKS 282
SHL +YFL++ F+RV ++L + ++ VL K L + Y++ +
Sbjct: 286 SHLHDNLNSYFLLKFFVRVLFGVCMILIWKSFAKQALLAVLPPIFKSLRLSYLEPKSQSE 345
Query: 283 DMLLKPTGRQENTSAIGSSL 342
+ TG + IG+ L
Sbjct: 346 KGIRAATGSNHSPGNIGTEL 365
>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 26.2 bits (55), Expect = 6.2
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Frame = +3
Query: 357 DICEELEKTARRLIGEDGLKAGLAFPTGCSR--NHCAAHYTPNTGDTTVLEYDDVVKIDF 530
D +LE+ R+ + L GL+F T S N HY+P + +++ + D
Sbjct: 343 DAATKLEQFRRK----NNLFMGLSFETISSTGPNGAVIHYSPPATGSAIIDPTKIYLCDS 398
Query: 531 GTHINGRIIDCAFTLHF 581
G D T HF
Sbjct: 399 GAQYKDGTTDVTRTWHF 415
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 400 VKMGSKQVWLSPQDAAATTVQRII 471
V G + L PQD A TT++RI+
Sbjct: 1241 VHSGDATLVLPPQDLAPTTIERIV 1264
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,737,459
Number of Sequences: 5004
Number of extensions: 53518
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -