Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_N10
         (883 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10621| Best HMM Match : Peptidase_M24 (HMM E-Value=4.3e-14)        163   1e-40
SB_31371| Best HMM Match : Peptidase_M24 (HMM E-Value=0)               56   5e-08
SB_2124| Best HMM Match : F5_F8_type_C (HMM E-Value=0.0055)            28   8.7  

>SB_10621| Best HMM Match : Peptidase_M24 (HMM E-Value=4.3e-14)
          Length = 708

 Score =  163 bits (397), Expect = 1e-40
 Identities = 77/130 (59%), Positives = 91/130 (70%), Gaps = 2/130 (1%)
 Frame = +3

Query: 351 MIDICEELEKTARRLIGE-DGLK-AGLAFPTGCSRNHCAAHYTPNTGDTTVLEYDDVVKI 524
           + D+ E +++T      E DG    GLAFPTGCS NHCAAHYTPN GD TVL YDDV KI
Sbjct: 82  LCDVGEAIQETMESYEVELDGKTYKGLAFPTGCSLNHCAAHYTPNAGDKTVLSYDDVCKI 141

Query: 525 DFGTHINGRIIDCAFTLHFNPRYDPLVKGVQXATEAGIKASGVDVRLCDVXAAVQXVMXS 704
           DFGTHINGRI+DCAFT+ FNP+YD L+  V+ AT  GI+ SG+D RLCDV  A+Q  M S
Sbjct: 142 DFGTHINGRIVDCAFTVAFNPKYDNLLAAVKDATNTGIRESGIDARLCDVGEAIQETMES 201

Query: 705 HXXEXXGXMY 734
           +  E  G  Y
Sbjct: 202 YEVELDGKTY 211



 Score =  160 bits (388), Expect = 2e-39
 Identities = 70/104 (67%), Positives = 79/104 (75%)
 Frame = +3

Query: 423 LAFPTGCSRNHCAAHYTPNTGDTTVLEYDDVVKIDFGTHINGRIIDCAFTLHFNPRYDPL 602
           LAFPTGCS NHCAAHYTPN GD TVL YDDV KIDFGTHINGRI+DCAFT+ FNP+YD L
Sbjct: 2   LAFPTGCSLNHCAAHYTPNAGDKTVLSYDDVCKIDFGTHINGRIVDCAFTVAFNPKYDNL 61

Query: 603 VKGVQXATEAGIKASGVDVRLCDVXAAVQXVMXSHXXEXXGXMY 734
           +  V+ AT  GI+ SG+D RLCDV  A+Q  M S+  E  G  Y
Sbjct: 62  LAAVKDATNTGIRESGIDARLCDVGEAIQETMESYEVELDGKTY 105


>SB_31371| Best HMM Match : Peptidase_M24 (HMM E-Value=0)
          Length = 465

 Score = 55.6 bits (128), Expect = 5e-08
 Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
 Frame = +3

Query: 342 GMTMIDICEE-----LEKTARRLIGEDGLKAGLAFPTGCSRNHCAAHYTPNTGDTTV-LE 503
           G T   +CE+     LE+T +    E  LK G+AFPT  S N+C  H++P   +  + L 
Sbjct: 46  GTTARTLCEKGDALILEETDKVYKKEKELKKGIAFPTCISVNNCVCHFSPLLSEPDITLN 105

Query: 504 YDDVVKIDFGTHINGRIIDCAFTL 575
             D+VKIDFG HI+G I     T+
Sbjct: 106 DGDLVKIDFGVHIDGFIAVIGHTI 129


>SB_2124| Best HMM Match : F5_F8_type_C (HMM E-Value=0.0055)
          Length = 596

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +2

Query: 341 WHDY-DRYL*RVREDCETSYW*RWAQSRSGFPHRMQP 448
           W  +  +YL RV  D  TS W +WA +  G+   + P
Sbjct: 271 WQQFMGKYLWRVCGDFTTSRWQQWASTCGGYVETLAP 307


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,707,257
Number of Sequences: 59808
Number of extensions: 412467
Number of successful extensions: 1171
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2514529411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)