Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_N10
(883 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117205-8|CAB55167.1| 444|Caenorhabditis elegans Hypothetical ... 300 7e-82
AC006696-3|AAF39984.1| 391|Caenorhabditis elegans Hypothetical ... 61 1e-09
Z47357-5|CAA87424.1| 446|Caenorhabditis elegans Hypothetical pr... 32 0.62
Z81029-3|CAB02699.2| 207|Caenorhabditis elegans Hypothetical pr... 30 1.9
U61950-6|AAC24291.1| 528|Caenorhabditis elegans Nuclear hormone... 29 3.3
AF273791-1|AAG15139.1| 525|Caenorhabditis elegans nuclear recep... 29 3.3
AF273790-1|AAG15138.1| 534|Caenorhabditis elegans nuclear recep... 29 3.3
AF273787-1|AAG15135.1| 527|Caenorhabditis elegans nuclear recep... 29 3.3
AF043701-7|AAK18972.1| 498|Caenorhabditis elegans Hypothetical ... 29 3.3
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 29 4.4
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 29 4.4
Z97190-1|CAB10024.1| 1111|Caenorhabditis elegans Hypothetical pr... 28 7.7
>AL117205-8|CAB55167.1| 444|Caenorhabditis elegans Hypothetical
protein Y116A8A.9 protein.
Length = 444
Score = 300 bits (737), Expect = 7e-82
Identities = 138/229 (60%), Positives = 171/229 (74%), Gaps = 2/229 (0%)
Frame = +3
Query: 123 PVAELFPDGNFPEGQIMDHGP--AEGIDERTAKNRFTSEEKRALDRLHKDIYQEIRHAAE 296
P+ E FPDG FP G +D P +G D R A +R ++EEK+ALD +++++Q+ R +AE
Sbjct: 81 PIDEQFPDGKFPHG--IDESPYYLKGKDGRVATDRESNEEKKALDISYEEVWQDYRRSAE 138
Query: 297 AHRQTRKHIRNWIKPGMTMIDICEELEKTARRLIGEDGLKAGLAFPTGCSRNHCAAHYTP 476
AHRQ RK++++WIKPGMTMI+ICE LE T+RRLI E GL+AGLAFPTGCS NHCAAHYTP
Sbjct: 139 AHRQVRKYVKSWIKPGMTMIEICERLETTSRRLIKEQGLEAGLAFPTGCSLNHCAAHYTP 198
Query: 477 NTGDTTVLEYDDVVKIDFGTHINGRIIDCAFTLHFNPRYDPLVKGVQXATEAGIKASGVD 656
N GDTTVL+Y DV KID+G H+ GR+ID AFT+HF+P++DPLV+ V+ AT AGIK SG+D
Sbjct: 199 NAGDTTVLQYGDVCKIDYGIHVRGRLIDSAFTVHFDPKFDPLVEAVREATNAGIKESGID 258
Query: 657 VRLCDVXAAVQXVMXSHXXEXXGXMYXXKPXRNLNGHXXEPYXIXXGXT 803
VRLCDV V+ VM SH E G Y KP RNLNGH Y I G T
Sbjct: 259 VRLCDVGEIVEEVMTSHEVELDGKSYVVKPIRNLNGHSIAQYRIHAGKT 307
>AC006696-3|AAF39984.1| 391|Caenorhabditis elegans Hypothetical
protein W08E12.7 protein.
Length = 391
Score = 60.9 bits (141), Expect = 1e-09
Identities = 41/114 (35%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Frame = +3
Query: 288 AAEAHRQTRKHIRNWIKPGMTMIDICEE-----LEKTARRLIGEDGLKAGLAFPTGCSRN 452
AAE K + IK G D+C+ LEKT + E G+A PT S +
Sbjct: 35 AAEITNAVLKEVLANIKEGAIAGDLCDLGDKLILEKTGKLYKKEKNFTKGIAMPTCISID 94
Query: 453 HCAAHYTPNTGDT-TVLEYDDVVKIDFGTHINGRIIDCAFTLHFNPRYDPLVKG 611
+C HYTP + VL+ VVK+D GTHI+G I A T+ D V G
Sbjct: 95 NCICHYTPLKSEAPVVLKNGQVVKVDLGTHIDGLIATAAHTVVVGASKDNKVTG 148
>Z47357-5|CAA87424.1| 446|Caenorhabditis elegans Hypothetical
protein ZK1128.5 protein.
Length = 446
Score = 31.9 bits (69), Expect = 0.62
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 117 TIPVAELFPDGNFPEGQIMDHGPAEGIDERTA-KNRFTSEEKRALDRLHKDIYQEIRHAA 293
++P+ EL +G + M H P G + R A K +F+S K + L KDIY H
Sbjct: 130 SVPMWELRVEGRLLDD--MQH-PTVGANPRPAPKRKFSSFFKSLVIELDKDIYGPDNHLV 186
Query: 294 EAHR 305
E HR
Sbjct: 187 EWHR 190
>Z81029-3|CAB02699.2| 207|Caenorhabditis elegans Hypothetical
protein C01A2.4 protein.
Length = 207
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 216 NRFTSEEKRALDRLHKDIYQEIRH-AAEAHRQTRKHI 323
NR ++R +DR K++ QEI+ AA+ H +H+
Sbjct: 24 NRDLESDRRQMDRREKELEQEIKKLAAKGHNDAARHL 60
>U61950-6|AAC24291.1| 528|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 46, isoform a protein.
Length = 528
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -2
Query: 276 PDKYLYVIYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESFHQEI 136
P+ Y ++ Q+ PH + F +HQ P P S HQ I
Sbjct: 16 PNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 62
>AF273791-1|AAG15139.1| 525|Caenorhabditis elegans nuclear receptor
NHR-46 protein.
Length = 525
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -2
Query: 276 PDKYLYVIYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESFHQEI 136
P+ Y ++ Q+ PH + F +HQ P P S HQ I
Sbjct: 13 PNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 59
>AF273790-1|AAG15138.1| 534|Caenorhabditis elegans nuclear receptor
NHR-46 protein.
Length = 534
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -2
Query: 276 PDKYLYVIYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESFHQEI 136
P+ Y ++ Q+ PH + F +HQ P P S HQ I
Sbjct: 22 PNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 68
>AF273787-1|AAG15135.1| 527|Caenorhabditis elegans nuclear receptor
NHR-46 protein.
Length = 527
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -2
Query: 276 PDKYLYVIYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESFHQEI 136
P+ Y ++ Q+ PH + F +HQ P P S HQ I
Sbjct: 15 PNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 61
>AF043701-7|AAK18972.1| 498|Caenorhabditis elegans Hypothetical
protein K12C11.1 protein.
Length = 498
Score = 29.5 bits (63), Expect = 3.3
Identities = 37/145 (25%), Positives = 54/145 (37%), Gaps = 5/145 (3%)
Frame = +3
Query: 288 AAEAHRQTRKHIRNWIKPGMTMIDICEELEKTARRLIGEDGLKAGLAFPTGCSRNHCAAH 467
A+EAHR KH+R PG+ + T+ G L TGC N H
Sbjct: 199 ASEAHRAAMKHMR----PGLYEYQLESLFRHTSYYHGGCRHLAYTCIAATGC--NGSVLH 252
Query: 468 Y-TPNTGDTTVLEYDDVVKIDFGTHINGRIIDCAFTLHFNPRYDPLVK----GVQXATEA 632
Y N + ++ D+ D G N D + N ++ K V A A
Sbjct: 253 YGHANAPNDKFIKDGDMCLFDMGPEYNCYASDITTSFPSNGKFTEKQKIVYNAVLAANLA 312
Query: 633 GIKASGVDVRLCDVXAAVQXVMXSH 707
+KA+ VR D+ + V+ H
Sbjct: 313 VLKAAKPGVRWTDMHILSEKVILEH 337
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/29 (58%), Positives = 18/29 (62%)
Frame = +3
Query: 381 TARRLIGEDGLKAGLAFPTGCSRNHCAAH 467
TAR+L E GLK GLAF G SRN H
Sbjct: 833 TARQLTYETGLKCGLAF-GGYSRNANVQH 860
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/29 (58%), Positives = 18/29 (62%)
Frame = +3
Query: 381 TARRLIGEDGLKAGLAFPTGCSRNHCAAH 467
TAR+L E GLK GLAF G SRN H
Sbjct: 833 TARQLTYETGLKCGLAF-GGYSRNANVQH 860
>Z97190-1|CAB10024.1| 1111|Caenorhabditis elegans Hypothetical
protein H05G16.1 protein.
Length = 1111
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 219 RFTSEEKRALDRLHKDIYQEIRHAAEAHRQTRKHIRNWIK 338
+ + + K+ L +LH D YQ ++ E +TR +N+ K
Sbjct: 277 KLSFKRKKLLVKLHPDSYQYLKETVEFSFETRDECKNFWK 316
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,211,968
Number of Sequences: 27780
Number of extensions: 308635
Number of successful extensions: 898
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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