Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_N08
         (832 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    25   0.97 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   3.9  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   3.9  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   3.9  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   3.9  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   3.9  

>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = +3

Query: 54  WINEIPTVPI 83
           W+NEIPT+P+
Sbjct: 321 WLNEIPTMPV 330


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 224 SSLKNHYFHCFITYSVGRK 280
           SS    +FHC+     GRK
Sbjct: 416 SSFFQQFFHCYCPIKFGRK 434


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 299 YYRPRTASAQPSK 261
           YYRPRT+  +P +
Sbjct: 232 YYRPRTSRTEPPR 244


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -3

Query: 437 QMYRPSQTPPPGSVLEPDHAGVLNGDERFRHVT 339
           Q Y+ +Q   PG +  P+H  V       R+ T
Sbjct: 303 QHYQMNQNMYPGEMYNPEHTTVNEAQPYVRNTT 335


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -3

Query: 437 QMYRPSQTPPPGSVLEPDHAGVLNGDERFRHVT 339
           Q Y+ +Q   PG +  P+H  V       R+ T
Sbjct: 251 QHYQMNQNMYPGEMYNPEHTTVNEAQPYVRNTT 283


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -3

Query: 437 QMYRPSQTPPPGSVLEPDHAGVLNGDERFRHVT 339
           Q Y+ +Q   PG +  P+H  V       R+ T
Sbjct: 434 QHYQMNQNMYPGEMYNPEHTTVNEAQPYVRNTT 466


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,978
Number of Sequences: 336
Number of extensions: 3710
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22829180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)