Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_N08
(832 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0456 + 29521282-29522064 33 0.37
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 32 0.64
03_04_0006 + 16257288-16259522 30 2.6
06_03_1448 + 30235336-30236763 29 3.4
06_03_1443 + 30182018-30183445 29 3.4
06_03_1440 + 30166515-30167942 29 3.4
06_03_1437 + 30151030-30152457 29 3.4
06_03_1429 + 30100834-30102261 29 3.4
06_03_1425 + 30084383-30085810 29 3.4
06_03_1420 - 30053713-30055140 29 3.4
06_03_0854 + 25400855-25403741,25406174-25407708 29 4.5
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 6.0
10_02_0074 - 4965688-4966638,4966877-4966906,4968656-4968927,496... 28 7.9
>01_06_0456 + 29521282-29522064
Length = 260
Score = 32.7 bits (71), Expect = 0.37
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Frame = -2
Query: 414 SPAWQC--PRTGSRGSFKRRRAFPPRHHSARLER----NTVRPPILSTA 286
S AW+C P +G+RG +RRR P S R R +T+RP + S A
Sbjct: 10 SRAWRCYSPASGARGGSRRRRRRPAGTTSRRCSRADRLDTLRPYVTSAA 58
>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 31.9 bits (69), Expect = 0.64
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 9 EGSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLLSL 158
+G+ PR + D EW N PT+ ++ + +PRE Q+ K + L
Sbjct: 1392 QGNCAPRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLKPAIFIL 1441
>03_04_0006 + 16257288-16259522
Length = 744
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = -2
Query: 219 AKRSP---TYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWE 67
A+RSP Y T L + ARL T PA SP +AV S + G W+
Sbjct: 162 ARRSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSGKRVAVASWQGKPGLWD 215
>06_03_1448 + 30235336-30236763
Length = 475
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -3
Query: 413 PPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTAS 276
PPP ++ + A + GD+R+ V LH W+E R YR +S
Sbjct: 127 PPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1443 + 30182018-30183445
Length = 475
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -3
Query: 413 PPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTAS 276
PPP ++ + A + GD+R+ V LH W+E R YR +S
Sbjct: 127 PPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1440 + 30166515-30167942
Length = 475
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -3
Query: 413 PPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTAS 276
PPP ++ + A + GD+R+ V LH W+E R YR +S
Sbjct: 127 PPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1437 + 30151030-30152457
Length = 475
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -3
Query: 413 PPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTAS 276
PPP ++ + A + GD+R+ V LH W+E R YR +S
Sbjct: 127 PPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1429 + 30100834-30102261
Length = 475
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -3
Query: 413 PPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTAS 276
PPP ++ + A + GD+R+ V LH W+E R YR +S
Sbjct: 127 PPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1425 + 30084383-30085810
Length = 475
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -3
Query: 413 PPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTAS 276
PPP ++ + A + GD+R+ V LH W+E R YR +S
Sbjct: 127 PPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1420 - 30053713-30055140
Length = 475
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -3
Query: 413 PPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTAS 276
PPP ++ + A + GD+R+ V LH W+E R YR +S
Sbjct: 127 PPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 219 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 94
AKR+PT T P AR +++ +F +P P P +V+S
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVIS 515
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 6.0
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 341 TTLHAWNETPCARRYY 294
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>10_02_0074 -
4965688-4966638,4966877-4966906,4968656-4968927,
4969092-4969329
Length = 496
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +3
Query: 9 EGSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERA 119
EGS H+ D H+W E T+P P E A
Sbjct: 460 EGSNQGLHICKDGHQWPLEESTMPTVECVLQHPGESA 496
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,789,139
Number of Sequences: 37544
Number of extensions: 486200
Number of successful extensions: 1597
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1594
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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