Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_N08
         (832 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    33   0.19 
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical ...    28   7.1  
U50199-2|AAP46272.1|  169|Caenorhabditis elegans Pharyngeal enha...    23   8.9  
AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical ...    28   9.4  

>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = -2

Query: 429 PPQSNSPAWQCPRTGSRGSFKRRRAFPPRHHSARLERNTVRPPILSTAHR 280
           PP+  SP    PR  +R S  RRR  PP     R +R   R P+     R
Sbjct: 216 PPRRGSPRRGSPRRDTRRSPPRRRGSPPARGGDRRDRREDRRPVRDEKER 265


>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
            F54B3.1b protein.
          Length = 3394

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -2

Query: 234  FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 115
            F DD  K     ++   S  +   ESSSTGSS  +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468


>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
            F54B3.1a protein.
          Length = 3396

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -2

Query: 234  FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 115
            F DD  K     ++   S  +   ESSSTGSS  +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468


>U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical
           protein B0432.7 protein.
          Length = 621

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 26/79 (32%), Positives = 39/79 (49%)
 Frame = +2

Query: 83  LLSSETTAKGTGLGESAGKEDPVELDSSLAL*GDMRGVA*VGDRFARSSLKNHYFHCFIT 262
           + S  TT+    + +S+  ++   LD   AL G +R VA + DR  R SLKN     F+T
Sbjct: 32  IFSLATTSAARYVSDSSA-DNTTRLDE--ALNGMIRYVADM-DRATRLSLKNQQLKEFLT 87

Query: 263 YSVGRKRCAVDNIGGRTVF 319
           Y+      +  NI  R+ F
Sbjct: 88  YTPVILNASTTNIVTRSKF 106


>AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical
           protein ZC190.4 protein.
          Length = 629

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/45 (28%), Positives = 28/45 (62%)
 Frame = -1

Query: 328 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCY 194
           +GT+ +   DIID   +P N +S++ +  +++  R  ET++H+ +
Sbjct: 287 VGTR-KTSTDIIDGFNVPSNMISDDNLPALIY--RVIETLNHMIF 328


>U50199-2|AAP46272.1|  169|Caenorhabditis elegans Pharyngeal
           enhancer binding protein1, isoform b protein.
          Length = 169

 Score = 23.4 bits (48), Expect(2) = 8.9
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -2

Query: 450 RYSLTDVPPQSNSPAWQC 397
           RY++  + P+ N  +W+C
Sbjct: 69  RYNIYQIAPERNFKSWRC 86



 Score = 23.0 bits (47), Expect(2) = 8.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 351 PPRHHSARLERNTVRPPI 298
           PPRHH A +E   VR  I
Sbjct: 120 PPRHHVAEIEFIKVRGEI 137


>AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical
           protein Y53C10A.4 protein.
          Length = 908

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = -2

Query: 231 SDDRAKRSPTYATP----LMSPYNARLESSSTGSSFPAD-SPKP 115
           +DD   R P + +     L  PY +   SSS+ SS P+D +P+P
Sbjct: 681 NDDSDSRFPAFKSSSVAMLTEPYKSSSSSSSSTSSIPSDPAPRP 724


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,348,947
Number of Sequences: 27780
Number of extensions: 363534
Number of successful extensions: 1031
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)