Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_N08
         (832 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-...    31   0.94 
At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kina...    30   2.2  
At1g54020.2 68414.m06155 myrosinase-associated protein, putative...    29   2.9  
At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family prot...    29   3.8  
At3g20010.1 68416.m02531 SNF2 domain-containing protein / helica...    29   3.8  
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    29   5.0  
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi...    28   8.7  
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ...    28   8.7  

>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
           GTP-binding protein GUF1 - Saccharomyces cerevisiae,
           PIR:S50374
          Length = 661

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -1

Query: 328 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCYTSHV 182
           LG +H  PA +I+R P PP  +S   +++++F     E    +CY S V
Sbjct: 231 LGLEHVLPA-VIERIPPPPG-ISESPLRMLLFDSFFNEYKGVICYVSVV 277


>At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kinase
           family protein low similarity to phosphatidylinositol
           3,5-kinase [Candida albicans] GI:14571648; contains Pfam
           profile PF01504: Phosphatidylinositol-4-phosphate
           5-Kinase
          Length = 1648

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -3

Query: 458 DTCVIL*QMYRPSQTPPPGSVLEPDHAGVLNGDERFRHVTTLHAWNE 318
           + C  L + + P+Q  PP S +E + +  LNGD     VT  ++ N+
Sbjct: 662 EVCESLCEDFDPTQIFPPSSEVETEQSDTLNGDFANNLVTRSYSSNQ 708


>At1g54020.2 68414.m06155 myrosinase-associated protein, putative
           strong similarity to myrosinase-associated proteins
           GI:1769968, GI:1769970, GI:1216389,GI:1216391 from
           [Brassica napus]; contains InterPro Entry IPR001087
           Lipolytic enzyme, G-D-S-L family
          Length = 372

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +2

Query: 626 LACGSQXFIXTLLFDPSMSALPIIAXQNSPXVGLFT 733
           + C S   +  LL  P +  L  I+ QN P VGLFT
Sbjct: 1   MECSSVSVLGILLVFPLLHNLVTISGQNLPAVGLFT 36


>At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family protein
           similar to SP|P22418 Fructose-1,6-bisphosphatase,
           chloroplast precursor (EC 3.1.3.11)
           (D-fructose-1,6-bisphosphate 1-phosphohydrolase)
           (FBPase) {Spinacia oleracea}; contains Pfam profile
           PF00316: fructose-1,6-bisphosphatase
          Length = 404

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -2

Query: 198 ATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLD 88
           A+ + SP+N+ L   S  SS  +D   P PL +VS D
Sbjct: 105 ASLVASPFNSSLGKLSVNSSSGSDRDAPKPLDIVSND 141


>At3g20010.1 68416.m02531 SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein similar to transcription
           factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 1047

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = -2

Query: 435 DVPPQSNSPAWQCPRTGSRGSFKRRRAFPPRHHSARLERNTVRPPILSTAHRFRP 271
           +VPPQ   P W   RT    ++  RR  P     AR E     PP  +++   RP
Sbjct: 16  EVPPQ---PVWPQTRTRMDPTWLSRRPLPTVDSHARAEHTNQAPPNGASSDTSRP 67


>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 469 LSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRSFXIK 582
           LS  R   W  RAK  L+Q+  TH+  E T+Y+S  ++
Sbjct: 282 LSSRRIDRW--RAKYQLMQLVRTHKGMEDTSYKSIELR 317


>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
           like protein A, Arabidopsis thaliana, gb:Q07970
          Length = 790

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 292 DRAPLPPNRVSNETMKVVVFQRRSRET 212
           +RAPLP   V  E +  + F +R +ET
Sbjct: 7   NRAPLPSPNVKKEALSSIPFDKRRKET 33


>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
           F-box family protein
          Length = 379

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 343 SPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETIS 206
           S LC LG+  R PAD I+   L   R+    M  +V  R S + I+
Sbjct: 54  SILCKLGSTSRCPADFIN-VLLTCKRLKGLAMNPIVLSRLSPKAIA 98


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,776,436
Number of Sequences: 28952
Number of extensions: 355941
Number of successful extensions: 1012
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1911862400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)