Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_N07
(857 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 34 0.17
07_03_1747 + 29188568-29188715,29188793-29189541 31 1.6
12_01_0524 - 4167867-4168445 29 3.6
09_03_0188 + 13266080-13266329,13268124-13268201,13268274-132683... 29 4.7
08_02_1480 + 27401923-27402158,27402847-27402982,27403119-274031... 29 4.7
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 29 6.3
11_06_0248 + 21680237-21680392,21680450-21681141,21681397-216817... 29 6.3
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468... 28 8.3
04_01_0530 - 6928528-6929500,6929514-6930964 28 8.3
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.3
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 28 8.3
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 33.9 bits (74), Expect = 0.17
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -3
Query: 342 HQPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQM-QGQVDYDFGVGG 178
H P AAA P VP++ P L + S GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 395 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVLG 547
PPP TT++ V L TA + S + QF+C+ TTC + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260
>12_01_0524 - 4167867-4168445
Length = 192
Score = 29.5 bits (63), Expect = 3.6
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -3
Query: 339 QPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVPIVR 160
QPS+AA P + + + + YSH G + S + G + G GGG P V
Sbjct: 104 QPSSAAVAPLPSSTNLKSAVRSAMGSYSHSGTRRVHFGDSTVLG--EKAAGAGGGEPAV- 160
Query: 159 CEERVDHEGQ*C 124
EE + E + C
Sbjct: 161 VEEVEEEEEKEC 172
>09_03_0188 +
13266080-13266329,13268124-13268201,13268274-13268374,
13268474-13268566,13268648-13268719,13268808-13268930,
13269143-13269412,13271154-13271204,13271325-13271513,
13271613-13271777
Length = 463
Score = 29.1 bits (62), Expect = 4.7
Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Frame = +1
Query: 367 DVVLLNAAATTAGDYALRARVSNNGSVSW-IKRLDISTPISMQLDNWPNDMQTCTFKFGS 543
DV LLN A G++ V + + SW +++ D+ ++ P + G
Sbjct: 25 DVHLLNNLAAHGGEFQREPWVEKDDAASWTVEKDDVPLVNNIVAHGDPEGSSNSLARSGG 84
Query: 544 RMHNSDEMDFVIWQKNIQYV 603
+ N E + +Q N +Y+
Sbjct: 85 HLANVHEGAGMFYQPNFKYI 104
>08_02_1480 +
27401923-27402158,27402847-27402982,27403119-27403168,
27403810-27403813,27404394-27404494,27405084-27406305
Length = 582
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = +1
Query: 454 IKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVIWQKNIQYVRVRS 615
+ R+ +S + D P +++ + K G +N DF WQ+ I+ +R+
Sbjct: 282 LDRMSVSANTEVNRDQGPKFVRSASSKSGFFRNNKTPEDFATWQRIIRLDAIRT 335
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 240 VRVHRANTGRSSNELDRQTTELERRGVGLQHLAGVLGTL 356
V+ H R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>11_06_0248 +
21680237-21680392,21680450-21681141,21681397-21681724,
21681945-21682801,21682928-21683378,21683761-21684066,
21684136-21684456,21684539-21684745,21685568-21685810
Length = 1186
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -1
Query: 638 WTEPSHPTLLTRTYCIFFCQITKSISSLLCILEPN 534
W +P +PT+ + C F+ ++T+ ++ ILE N
Sbjct: 786 WNDPRNPTITIQLICGFYGEMTRLMTKDDIILEEN 820
>09_04_0190 -
15443764-15443838,15445360-15445458,15446396-15446891,
15449436-15449479,15449999-15450104,15450243-15450314,
15450474-15450588,15451182-15451407
Length = 410
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +3
Query: 246 VHRANTGRSSNELDRQTTELERRGVG 323
V+ A +SS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +3
Query: 75 VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 215
+SP+LCY+ C RK+ +L+ + SGLPP++ S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 424 GRGERSPRRWLQPRLAVPRQASTSVPRTP 338
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 421 RGERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPTPLRSNS 299
R RSPRR P R + + R+PA S +P+R++S
Sbjct: 224 RDSRSPRRSASPPNGRNRSPTPNASRSPAPRDSRSPMRADS 264
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,619,755
Number of Sequences: 37544
Number of extensions: 558003
Number of successful extensions: 1791
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1789
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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