Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_N05
         (882 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)               349   2e-96
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)                   36   0.043
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.18 
SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)                 31   1.2  
SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)           31   1.6  
SB_55670| Best HMM Match : zf-C2H2 (HMM E-Value=1.6e-29)               30   2.9  
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)                  30   2.9  
SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032)                 29   5.0  
SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3)                29   5.0  
SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27)               29   5.0  
SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   5.0  
SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26)         29   5.0  
SB_37694| Best HMM Match : PSI_PsaE (HMM E-Value=7.4)                  29   6.6  
SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)                      29   6.6  
SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)                   28   8.7  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score =  349 bits (858), Expect = 2e-96
 Identities = 158/214 (73%), Positives = 185/214 (86%)
 Frame = +2

Query: 74  MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVL 253
           MSGGLD+L L EEDV K LAA  HLGA N +FQME YVYKR++DG ++IN+++TWEKL+L
Sbjct: 1   MSGGLDILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLL 60

Query: 254 AARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPR 433
           AAR +V IENPADV VIS+RP+GQRA+LK+A+HTGATPIAGRFTPG FTNQIQAAFREPR
Sbjct: 61  AARIIVTIENPADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPR 120

Query: 434 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 613
           LLIV DP  DHQP+TEASYVNIPVIA CNTDSPLR VD+AIPCN K  HSIGLM+WLLAR
Sbjct: 121 LLIVCDPRIDHQPVTEASYVNIPVIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMFWLLAR 180

Query: 614 EVLRLRGVLPRDQRWDVVVDLFFYRXPEESEKDE 715
           EVLR+RG + R   W+++ DL+FYR PEE+EK+E
Sbjct: 181 EVLRMRGSISRALPWEIMPDLYFYRDPEEAEKEE 214


>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
          Length = 1772

 Score = 35.9 bits (79), Expect = 0.043
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = -1

Query: 675  KSTTTSQRWSRGSTPRSLNTSRANNHHIKPIEWEDLVLHGIAMST-NLSGE---SVLHKA 508
            K+TT   RWS+G TP      ++   H   I    L+ HG   ST NL+ E    VL++ 
Sbjct: 1396 KTTTDKTRWSKGQTPNGKVAQKSKFQH--GIAGTQLIYHGTGPSTKNLTTEQAKQVLNEN 1453

Query: 507  ITGMLTY 487
              G +TY
Sbjct: 1454 ELGTMTY 1460


>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 33.9 bits (74), Expect = 0.18
 Identities = 32/109 (29%), Positives = 43/109 (39%), Gaps = 5/109 (4%)
 Frame = +1

Query: 247  CSGCSCCRSHREPR*CVRHLITALRSACCTEVC--RAHRCYA---YCGTFHTRCFY*PDP 411
            CS C      R    CV   I  L  + C   C  + H   A    C   H+ C      
Sbjct: 822  CSTCEGGNGLRNCSACVAPFI--LLDSYCVRECPQKGHFLNAKLRQCKKCHSSC-----S 874

Query: 412  SCIP*TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHCYP 558
            SCI   S+ DCI  C+ PS     F C+ +C         T++C +C+P
Sbjct: 875  SCIG-PSANDCI-TCSDPSNALIGFTCKANCTPGQFKNTATRVCENCHP 921


>SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 965

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = -3

Query: 520  VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRRST 356
            V  SN  +V +    N   + CR Q NQ T FT   +  ++    C+T RN RS+
Sbjct: 876  VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMRSS 930


>SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)
          Length = 432

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +2

Query: 446 LDPAQDHQPITEASYVNIPVIALCNTDSPLRF 541
           LDP  +HQPIT+ +   I ++A   TD+PL+F
Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKF 147


>SB_55670| Best HMM Match : zf-C2H2 (HMM E-Value=1.6e-29)
          Length = 637

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -2

Query: 743 YHSLFLGFVVHPFHFLQXHGRRTNQPQHPSAGHGEAHHEASTLH 612
           +H++F G VVHP H    H     +P H   G+G  H   S  H
Sbjct: 298 HHNMFHGPVVHPLH--PNHYSSLQEP-HRDGGNGSPHGFFSVAH 338


>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
          Length = 315

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 578 HSIGLMWWLLAREVLRLRGVLP 643
           H  G +WW+L  E LR + VLP
Sbjct: 46  HDDGSVWWVLTSESLRAKAVLP 67


>SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032)
          Length = 397

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 427 TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHC 552
           TSSLD + PC+  S H+   +  + C C+  +++    C  C
Sbjct: 331 TSSLDTLAPCSF-SCHFACDVNTNQCICYYGYQMSDNKCKAC 371


>SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3)
          Length = 225

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -3

Query: 520 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRR 362
           V  SN  +V +    N   + CR Q NQ T FT   +  ++    C+T RN R
Sbjct: 155 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 207


>SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27)
          Length = 418

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -2

Query: 680 RTNQPQHPSAGHGEA-HHEASTLHVPTTTTSNQ*SGKTWCC 561
           R  QP H ++ +  A HH A  LH P  +TS   +   W C
Sbjct: 176 RDGQPCHGASMNNFAYHHAADFLHYPPVSTSYMPAHPYWTC 216


>SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
 Frame = -1

Query: 687 R*KNKSTTTSQRWSRGSTPRSLNTSRANNHHIKPIEWEDL---VLHGIAMSTNLSGESVL 517
           R  N+  T   ++   STP      + N+  ++P EW ++     H   +   L+GES  
Sbjct: 3   RGSNRRPTFKYKFGDSSTPFYSALKKQNDRSMRPWEWHEMKARYSHAQTLINALTGESKY 62

Query: 516 HKAITG 499
              +TG
Sbjct: 63  EFTLTG 68


>SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26)
          Length = 280

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -3

Query: 520 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRR 362
           V  SN  +V +    N   + CR Q NQ T FT   +  ++    C+T RN R
Sbjct: 196 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 248


>SB_37694| Best HMM Match : PSI_PsaE (HMM E-Value=7.4)
          Length = 158

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/53 (32%), Positives = 30/53 (56%)
 Frame = +3

Query: 273 PSRTPLMCSSSHHGPSVSVLY*SLPRTPVLRLLRDVSHQVLLLTRSKLHSVNL 431
           PSRTPL   ++ +G  +S+ Y       VLR+ R   H ++ ++R  L ++N+
Sbjct: 49  PSRTPLSQHNNGYGLRISI-YAVRYTAMVLRINRFALHIIVTVSRITLSAINV 100


>SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1601

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -1

Query: 636 TPRSLNTSRANNHHIKPIEWEDLVLHGIAMSTNLSGESVLH 514
           T +SLN S  N   + P EW + V+ G+     LSG ++L+
Sbjct: 864 TAQSLNVSVDNLKFLAPTEWRE-VIPGLKQEILLSGSNMLN 903


>SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)
          Length = 487

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -3

Query: 688 TVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVGR-LGVAWDSNVHK 539
           +V  Q+  + P  +T  HT+     T   P HQ + +GR  G   DSNV +
Sbjct: 241 SVTNQMRGHEPRSITYNHTSITAPLTTGYPDHQGSYMGRYAGSVADSNVSR 291


>SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)
          Length = 428

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +2

Query: 422 REPR-LLIVLDPAQDHQPITEASYVNIPVIALC-NTDSPLRFVDIAIPCNTK 571
           RE R +++ +D A  H P  + +Y NI +I L  NT S  + +D  I  N K
Sbjct: 255 RENRNIMLFMDNAPCHTPSLKNTYCNIKIIFLSKNTTSKTQPLDSGIIANWK 306


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,327,625
Number of Sequences: 59808
Number of extensions: 672869
Number of successful extensions: 1685
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1676
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2514529411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)