Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_N03
         (864 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    26   0.39 
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    26   0.39 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    26   0.39 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    25   0.68 
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              23   2.7  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   4.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   8.4  

>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 26.2 bits (55), Expect = 0.39
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 740 FMKILYTGASDSNCLCILXSQSQGSFQAPXS 832
           F+K + TG S ++C  ++ +   G F+A  S
Sbjct: 25  FIKNMITGTSQADCAVLIVAAGTGEFEAGIS 55


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 26.2 bits (55), Expect = 0.39
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 740 FMKILYTGASDSNCLCILXSQSQGSFQAPXS 832
           F+K + TG S ++C  ++ +   G F+A  S
Sbjct: 41  FIKNMITGTSQADCAVLIVAAGTGEFEAGIS 71


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 26.2 bits (55), Expect = 0.39
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 740 FMKILYTGASDSNCLCILXSQSQGSFQAPXS 832
           F+K + TG S ++C  ++ +   G F+A  S
Sbjct: 98  FIKNMITGTSQADCAVLIVAAGTGEFEAGIS 128


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.68
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 740 FMKILYTGASDSNCLCILXSQSQGSFQAPXS 832
           F+K + TG S ++C  ++ +   G F+A  S
Sbjct: 98  FIKNMITGTSQADCAVLIVAAGIGEFEAGIS 128


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +1

Query: 37  IHCAXRGFFITDKLVDILCLSVIKCQ 114
           +HC  R  F++D+++      V  CQ
Sbjct: 20  VHCGTRPSFVSDEMIATAASVVNACQ 45


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -2

Query: 542 DGQCLAYNTTHYRDHFVQESWVRVSLGPSRDTLERP 435
           D Q   Y    + +  V  + VRV LGP  D   RP
Sbjct: 514 DHQPYQYKIAVHSEQNVPGAVVRVFLGPKHDHQGRP 549


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 84  VHQLISDKESAPSTMDITQCSRIPXP 7
           +HQ IS K+ +P+T   ++CS I  P
Sbjct: 266 MHQ-ISKKKLSPATPKGSKCSMITTP 290


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,386
Number of Sequences: 438
Number of extensions: 4437
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)