Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_N02
(829 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0) 301 6e-82
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.65
SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037) 31 1.5
SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032) 29 4.6
SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3) 29 4.6
SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26) 29 4.6
SB_37694| Best HMM Match : PSI_PsaE (HMM E-Value=7.4) 29 6.1
SB_130| Best HMM Match : rve (HMM E-Value=0.0043) 29 6.1
>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
Length = 328
Score = 301 bits (738), Expect = 6e-82
Identities = 143/215 (66%), Positives = 167/215 (77%)
Frame = +3
Query: 66 MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVL 245
MSGGLD+L L EEDV K LAA HLGA N +FQME YVYKR++DG ++IN+++TWEKL+L
Sbjct: 1 MSGGLDILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLL 60
Query: 246 AARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPR 425
AAR +V IENPADV VIS+RP+GQRA+LK+A+HTGATPIAGRFTPG FTNQIQAAFREPR
Sbjct: 61 AARIIVTIENPADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 426 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAVPCNTKSSHSIGLMXVVVGT 605
LLIV DP DHQP+TEASYVNIPVIA CNTDSPLR VD+A+PCN K HSIGLM ++
Sbjct: 121 LLIVCDPRIDHQPVTEASYVNIPVIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMFWLLAR 180
Query: 606 *SVEASWCASP*PALGCXG*FVFYRDPXXSEKDEQ 710
+ S FYRDP +EK+EQ
Sbjct: 181 EVLRMRGSISRALPWEIMPDLYFYRDPEEAEKEEQ 215
>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 31.9 bits (69), Expect = 0.65
Identities = 32/109 (29%), Positives = 42/109 (38%), Gaps = 5/109 (4%)
Frame = +2
Query: 239 CSGCSCCRSHREPR*CVRHLITALRSACCTEVC--RAHRCYA---YCGTFHTRCFY*PDP 403
CS C R CV I L + C C + H A C H+ C
Sbjct: 822 CSTCEGGNGLRNCSACVAPFI--LLDSYCVRECPQKGHFLNAKLRQCKKCHSSC-----S 874
Query: 404 SCIP*TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHCCP 550
SCI S+ DCI C+ PS F C+ +C T++C +C P
Sbjct: 875 SCIG-PSANDCI-TCSDPSNALIGFTCKANCTPGQFKNTATRVCENCHP 921
>SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 965
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = -3
Query: 512 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRRST 348
V SN +V + N + CR Q NQ T FT + ++ C+T RN RS+
Sbjct: 876 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMRSS 930
>SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)
Length = 432
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 438 LDPAQDHQPITEASYVNIPVIALCNTDSPLRF 533
LDP +HQPIT+ + I ++A TD+PL+F
Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKF 147
>SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032)
Length = 397
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 419 TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHC 544
TSSLD + PC+ S H+ + + C C+ +++ C C
Sbjct: 331 TSSLDTLAPCSF-SCHFACDVNTNQCICYYGYQMSDNKCKAC 371
>SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3)
Length = 225
Score = 29.1 bits (62), Expect = 4.6
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -3
Query: 512 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRR 354
V SN +V + N + CR Q NQ T FT + ++ C+T RN R
Sbjct: 155 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 207
>SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26)
Length = 280
Score = 29.1 bits (62), Expect = 4.6
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -3
Query: 512 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRR 354
V SN +V + N + CR Q NQ T FT + ++ C+T RN R
Sbjct: 196 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 248
>SB_37694| Best HMM Match : PSI_PsaE (HMM E-Value=7.4)
Length = 158
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = +1
Query: 265 PSRTPLMCSSSHHGPSVSVLY*SLPRTPVLRLLRDVSHQVLLLTRSKLHSVNL 423
PSRTPL ++ +G +S+ Y VLR+ R H ++ ++R L ++N+
Sbjct: 49 PSRTPLSQHNNGYGLRISI-YAVRYTAMVLRINRFALHIIVTVSRITLSAINV 100
>SB_130| Best HMM Match : rve (HMM E-Value=0.0043)
Length = 297
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -1
Query: 673 KTNQPXHPSAGHGEAHHEASTLHVPTTTXIKPIEWEDLVLHGTAMSTNLS 524
+TN S+GH E STL+ T + P D+++ GT S NL+
Sbjct: 18 QTNVATDNSSGHCSPDEEYSTLYRVETKGVTPPLNFDVLVDGTKASQNLT 67
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,725,962
Number of Sequences: 59808
Number of extensions: 593152
Number of successful extensions: 1396
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1386
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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