Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_N02
(829 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi... 231 4e-61
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi... 223 9e-59
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi... 223 9e-59
At3g54570.1 68416.m06038 calmodulin-binding protein-related cont... 36 0.043
At2g22340.1 68415.m02651 hypothetical protein 33 0.31
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP... 32 0.40
At2g07020.1 68415.m00803 protein kinase family protein contains ... 30 2.2
At2g34150.1 68415.m04180 expressed protein 29 5.0
At1g11980.1 68414.m01384 ubiquitin family protein similar to Cha... 28 6.6
At5g01280.1 68418.m00037 expressed protein 28 8.7
>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
to laminin receptor-like protein GB:U01955 [Arabidopsis
thaliana]; identical to cDNA laminin receptor homologue
GI:16379
Length = 298
Score = 231 bits (565), Expect = 4e-61
Identities = 114/244 (46%), Positives = 150/244 (61%), Gaps = 4/244 (1%)
Frame = +3
Query: 87 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 266
L+ E DV M AA HLG +N N+QME YV+KRR DG ++ NL +TWEKL +AAR +VA
Sbjct: 12 LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71
Query: 267 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 446
IENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDP 131
Query: 447 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAVPCNTKSSHSIGLMXVVVGT*SVEASW 626
DHQPI E + NIP+IA C+TDSP+RFVDI +P N K HSIG + ++ ++
Sbjct: 132 RTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 191
Query: 627 CASP*PALGCXG*FVFYRDPXXSEKDEQQ----XXEXAVVPXKPXXXAPVXEXWNETLXP 794
+ FYR+P ++ +++ E +P P + W P
Sbjct: 192 TIAAGQKWDVMVDLFFYREPEETKPEDEDEAGPQAEYGALP-APEYGMVGGDQWTTAQIP 250
Query: 795 XXSW 806
+W
Sbjct: 251 DAAW 254
>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 280
Score = 223 bits (546), Expect = 9e-59
Identities = 100/163 (61%), Positives = 123/163 (75%)
Frame = +3
Query: 99 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 278
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
Query: 279 ADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 458
D+ V S+RP+GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP DH
Sbjct: 77 KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDH 136
Query: 459 QPITEASYVNIPVIALCNTDSPLRFVDIAVPCNTKSSHSIGLM 587
QPI E + NIP IA C+TDSP+ FVDI +P N K HSIG +
Sbjct: 137 QPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCL 179
>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 332
Score = 223 bits (546), Expect = 9e-59
Identities = 100/163 (61%), Positives = 123/163 (75%)
Frame = +3
Query: 99 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 278
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
Query: 279 ADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 458
D+ V S+RP+GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP DH
Sbjct: 77 KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDH 136
Query: 459 QPITEASYVNIPVIALCNTDSPLRFVDIAVPCNTKSSHSIGLM 587
QPI E + NIP IA C+TDSP+ FVDI +P N K HSIG +
Sbjct: 137 QPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCL 179
>At3g54570.1 68416.m06038 calmodulin-binding protein-related
contains similarity to potato calmodulin-binding protein
PCBP GI:17933110 from [Solanum tuberosum]
Length = 417
Score = 35.5 bits (78), Expect = 0.043
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -3
Query: 671 DKSTTTSQRWSRGSTPRSLNTSRANNHXHQTNRVGRLGVAWDSNVHKS 528
DK + T ++ S + ++SR+ R GR+G WD+NVH++
Sbjct: 75 DKKSQTGKKLDSCSREKKQSSSRSLKKGQSFKRSGRIGRCWDANVHRA 122
>At2g22340.1 68415.m02651 hypothetical protein
Length = 358
Score = 32.7 bits (71), Expect = 0.31
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 137 SWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC 256
SW LP+GD +Q C WY + S +G+ + C
Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227
>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
identical to SP|Q9GCB9 Mitochondrial ribosomal protein
S2 {Arabidopsis thaliana}; contains Pfam profile
PF00318: ribosomal protein S2
Length = 219
Score = 32.3 bits (70), Expect = 0.40
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 420 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD-IAVPCNTKSS 569
P ++V D + I EAS + IPV+A+ + + PL F + I P + S
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPARDS 181
>At2g07020.1 68415.m00803 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 700
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 375 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 476
TP TNQ++ A E +LDP PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653
>At2g34150.1 68415.m04180 expressed protein
Length = 700
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = -3
Query: 548 DSNVHKS*WGVCVAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTW 378
D +H+ W S + FSN L + +Q +QE+ E S D S TW
Sbjct: 308 DELIHQDPWAASEISSGTHSYSN-GFSNPLYDISGIQEHQESEEVESSCDTESIKTW 363
>At1g11980.1 68414.m01384 ubiquitin family protein similar to Chain
A, Structure Of Ubiquitin-Like Protein, Rub1 GI:6729726
from [Arabidopsis thaliana]
Length = 78
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +2
Query: 203 PCDQLASYLGKTCSGCSCCRSHREPR*CVRHLITALRSACC 325
P Q Y GK + + + R V HL+ ALR CC
Sbjct: 38 PVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGGCC 78
>At5g01280.1 68418.m00037 expressed protein
Length = 460
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 695 TXXRVTVEDKSTTTSQR-WSRGSTPRSLNTSR 603
T R T+ STT+S R WSR S+ TSR
Sbjct: 121 TTTRATLTSSSTTSSTRSWSRPSSSSGTGTSR 152
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,628,028
Number of Sequences: 28952
Number of extensions: 395039
Number of successful extensions: 873
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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