Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_N01
(855 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 217 1e-56
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 214 7e-56
10_02_0199 + 6668902-6669293,6669825-6669882 34 0.17
08_02_1278 - 25838146-25839411 32 0.67
03_05_0366 - 23505755-23506441 31 1.2
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 30 2.7
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657 30 2.7
06_01_0017 + 189346-189561,189614-189905,190024-190043 29 6.2
04_01_0588 + 7657510-7657992,7658397-7658843 29 6.2
02_04_0457 + 23093020-23093343,23093798-23093806 29 6.2
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 217 bits (529), Expect = 1e-56
Identities = 102/177 (57%), Positives = 122/177 (68%)
Frame = +3
Query: 183 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 362
VF+AP+RPD+V VH +S N RQPY VS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR
Sbjct: 31 VFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHR 90
Query: 363 SGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEK 542
+GQGAFGNMCRGGRMFAPTK WR+WH ARGH IE
Sbjct: 91 AGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRRVAVASALAATSVPSLVLARGHRIET 150
Query: 543 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIS 713
+PELPLV++D + I KT QA+ L+++ A++D K S +R GKGKMRNRR I+
Sbjct: 151 VPELPLVISDSAESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRNRRYIN 207
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 214 bits (523), Expect = 7e-56
Identities = 102/177 (57%), Positives = 121/177 (68%)
Frame = +3
Query: 183 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 362
V +APIRPD+V H +S N RQPY VS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR
Sbjct: 30 VLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHR 89
Query: 363 SGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEK 542
+GQGAFGNMCRGGRMFAPTK WRRWH ARGH IE
Sbjct: 90 AGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRLRRIAVASALAATAVPSLVLARGHRIEG 149
Query: 543 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIS 713
+PE PLVV+D ++ I KT Q++ L+++ A++D K S +RAGKGKMRNRR I+
Sbjct: 150 VPEFPLVVSDSIESIEKTAQSIKVLKQIGAYADAEKTKDSVAIRAGKGKMRNRRYIN 206
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 33.9 bits (74), Expect = 0.17
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +3
Query: 294 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 404
A+SW TGRA A + R R GG R A N G R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>08_02_1278 - 25838146-25839411
Length = 421
Score = 31.9 bits (69), Expect = 0.67
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = -2
Query: 623 APQEDDSLFGLVDLLDFVGYNQGKLGNLFNNVSSSL 516
A +E LF L+D+LD V +G+L LF+ S++L
Sbjct: 89 AAREPQRLFRLLDMLDAVARERGRLDELFSGESATL 124
>03_05_0366 - 23505755-23506441
Length = 228
Score = 31.1 bits (67), Expect = 1.2
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 180 FVFKAPIRPDLVNDVHVSMSKNSR-QPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGT 356
++ AP D +V S + R P C S E + +AES TG A R R+ G T
Sbjct: 108 WIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPT 167
Query: 357 HRSGQGA 377
+ + + A
Sbjct: 168 NDNDEEA 174
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 399 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 292
HH + H + YE+ + H + RQ QY QH
Sbjct: 150 HHQQYQQHHHQQQYEHQNRIHFQHHRQQQQYQQHQH 185
>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
Length = 390
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = -1
Query: 372 PDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 271
P + +HHHGH + Q H G PP
Sbjct: 33 PQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPPPP 66
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -1
Query: 369 DRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 271
D +HHH H G H Q QH PP
Sbjct: 32 DPQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPP 64
>06_01_0017 + 189346-189561,189614-189905,190024-190043
Length = 175
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -2
Query: 536 NNVSSSLNERWDAGSSNGCRQGR--SPLSEVDATVPTP 429
N+ +S L+ +WDAGS + SPLS V A P
Sbjct: 103 NDSTSKLSFKWDAGSCSSASSSAMYSPLSAVSAPAKAP 140
>04_01_0588 + 7657510-7657992,7658397-7658843
Length = 309
Score = 28.7 bits (61), Expect = 6.2
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Frame = +3
Query: 216 NDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRV---RGGGTHRSGQGAFGN 386
+D+ ++ SR + + ++S+ W G R+ + GGG R G
Sbjct: 201 HDIQWGDNQPSRSSGVLPSSSEWRSSSSRWDLGEITRRMDTLDMQMGGGQQRRPPAEDGL 260
Query: 387 MCRGGRMFAPTKPWRRW 437
P PWRRW
Sbjct: 261 GWASSWFGRPNLPWRRW 277
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +3
Query: 279 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 383
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,770,387
Number of Sequences: 37544
Number of extensions: 447338
Number of successful extensions: 1641
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1632
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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